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Query: d2pi2a_ b.40.4.3 (A:) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPLast
1 -76.400d2pi2a_ b.40.4.3 (A:) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1ARAQHIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQP 136
2 -19.000d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  18.QGPNGSVTTVESAKSLRDD-----------TWVTLRGNIVERISDDL---YVFKDASGTINV-----DIDHKRWNGVTVTPKDTVEIQGEVDKDWNSVEIDVKQIRKV........................... 106
3 -14.300d1x54a1 b.40.4.0 (A:1-104) automated matches {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  16  17...............................KKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETEKAKKLGRESSVIVEGIVKADEGGAEVHVEKLEVIQAVSEF..................... 104
4 -13.500d4ycub1 b.40.4.0 (B:72-216) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  53...............................ITLKVAGRIHAKRASGGKLIFDLRGEGVKLQVMANSRNYKSEEE-NNKLRRGDIIGVQGNPKTKKGELSIIPYEITLLS.......................... 136
5 -13.400d3a74a1 b.40.4.1 (A:4-145) Lysyl-tRNA synthetase (LysRS) {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  16  54...............................IEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYEFKISDLGDIVGVRGTMKTKVGELSIKVSSYEFLT.......................... 134
6 -13.100d3nema1 b.40.4.0 (A:1-102) automated matches {Thermococcus kodakarensis [TaxId: 311400]}  ali model 3D-neighbors follow..  14  17...............................QKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLPKLRSEDVVAVEGVVNF-KLGFEILPEKIVVLNRAE....................... 102
7 -12.900d5elna1 b.40.4.0 (A:46-193) automated matches {Cryptosporidium parvum [TaxId: 353152]}  ali model 3D-neighbors follow..  12  50...............................TTLSLSGRVTSIRSSSSKLIFDIFCEEQKVQIIANIMEHDISTGEHSEIRRGDVVGFTGFPKSKRGELSLFSKSVVLLS.......................... 134
8 -12.700d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}  ali model 3D-neighbors follow..  14  14...............................QEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVT---------GGLKLPLPESALRVRGLVVENAGGLEVQAKEVEVLSPALE...................... 90
9 -12.500d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  37...............................KEVLFRARVHNTRQQGATLAFTLRQQASLIQGLVKANKEGTISKNAGSLNLESIVLVRGIVKK-VQNLEIHITKIYTISETPE...................... 132
10 -12.300d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}  ali model 3D-neighbors follow..  14  17...............................EEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA--HPASPAYATAERVRPEWVVRAKGLVRL-TGRVEVELSALEVLAEAK....................... 104
11 -12.100d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  21NRKKKLKKLGIETLRDLLEFFPRDYEDRRKIFKLTTQGKIVSVETKKFQLTAVLSDGLVHVPLKWF---NQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPKEGEYVRRILPIYRLTSGISQ..... 161
12 -12.100d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  12  1......MEEKVGNLKPNM-------------ESVNVTVRVLEASEVRTISEAIVGDETGRVKLTLW-------GKHAGSIKEGQVVKIEAWTTAFKGQVQLNAGSKTKIAEASEDGFPESSQIP-----ENTPTAP 115
13 -12.000d6aqga1 b.40.4.0 (A:9-153) automated matches {Mycobacterium ulcerans [TaxId: 362242]}  ali model 3D-neighbors follow..  14  31............TLAEIRATYADLPTDSATEDIVGVAGRVVFARNTGKLCFATLQDGDGQAMISLDEVGRESLDRWKADVDIGDVVYVHGTVSSRRGELSVLADSWRMAAK......................... 133
14 -11.300d1wjja1 b.40.4.3 (A:8-139) Hypothetical protein At4g28440 (F20O9.120) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  13  10........VKVEQLKPGTTG-------------HTLTVKVIEANIVVPVVECLIGDETGCILFTAR-------NDQVDLMKPGATVILRSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLS.......... 127
15 -9.510d2pi2e_ b.40.4.3 (E:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  22...............................KPVCFVGRLEKIHPTGKMFILSDGEGK----------NGTIELMEPLDEEISGIVEVVGRVT---AKATILCTSYVQFKEDSH...................... 91

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.