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Query: d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DENKLEELKEQGFARIAIANEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAMSTTREKLCAAKLast
1 -106.000d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors  100  1DENKLEELKEQGFARIAIANEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAMSTTREKLCAAK 256
2 -81.600d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  22  1QVRSFEEIKRSGEIRIGTEAFPPFNYFDERNQLTGFEVDLGNAIAERLGLK-PRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG------PRTAKDLQGKVVGVQVGTTYMEAAQKI-PGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQE--RVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED............... 232
3 -79.800d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  22  1..........RGELRVGLEGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVK-LKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDK-PELTLVTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPL--GWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK.......... 232
4 -79.400d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  22  4.GSLIERINNKGTVTVGTETYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVK-VEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDS-----NIKSIADIKGVKTAQSLTSNYGEKAKAAG---AQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ........... 240
5 -78.900d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  21  1..DNPLGLIDPTTISVGTGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKQVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG------ITDAAGLKGKRLGVVQGTLQEIYAEKN-FAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAP---AGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPAAYLPK...... 241
6 -78.700d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  17  1...........EKFIVGTATYPPFEFVDKRGEVVGFDIDLAREISNKLGKT-LDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKG----ENKHPLPLTQYRSVAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN............... 224
7 -78.000d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  22  1......ASVSARTLHFGTSTYAPYEFVDADNKIVGFDIDVANAVCKEMQAE-CSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKG-----AYHTFADLKGKKVGLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPD-GKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWF.................. 227
8 -77.400d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  17  3.GDNWSKYQSNKSITIGFDTFVPMGFAQKDGSYAGFDIDLATAVFEKYGIT-VNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSS-----GITTAKDMTGKTLGAQAGSSGYADFEAN-VANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVNDYNVFTVGLETEAF--AVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVATK........... 246
9 -76.900d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  25  1...AIDEIKSRGYLLVGLADFPPFEFVDENGNIVGFDVDLAKEIARRLGVE-LKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFRPKTYEDL---VGKTVAVQIGTTGDIEVSK--YDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPD--LVISSGVLSSEQY--GIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS................. 226
10 -76.800d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  16  1.......GATKKKVVVGTDAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLD-YELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGS-----PVKNALDLKGKTIGVQNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLDRLKQ....... 235
11 -76.700d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  22  2...........KSITIATESYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIE-CKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLKAELDKFTKIFEGVKFGVQAGTSHEAFMKQM-MPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGGLFGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDAS............. 253
12 -76.400d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  1..TGWEQIKDKGKIVVATSTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLK-VEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDL---KGKKAAGAATTVYMEVARKYG-AKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYMPNK-QALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSKKIDAD...... 246
13 -76.200d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  1....IEAIKSKGKLVVALNDFAPFEYVDGKNQIVGSDIELAKAIATELGVE-LELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDL---ATYQSVNDLAQKKVGAQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLN-FEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASIE............. 237
14 -76.000d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  23  1........ALPQTVRIGTDTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVK-CTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI----QPTLESLKGKHVGVLQGSTQEAYANDNRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKYAFAGPSVKDKKYGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFN............... 234
15 -75.900d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  19  1............TVRMGTEAYPPYNFINDAGEVDGFERELGDELCKRAGLT-CEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDGADLSG----------IVAAQTATIQAGYIAESG---ATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGG--GVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAV............ 217
16 -75.000d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  19  1............PLLVATRVIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGT-GDIRSIDDLPGKVVATTAGSTAATYLRE---HHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESY--GIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD................. 219
17 -74.500d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  20  1......ATPKKDVYTIASDSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFK-LKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTD----DSIKSWKDLKGKTLGAKNGTASFDYLNAHAKEGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQK--FATPIKPIPDGQY--GFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESD............... 229
18 -74.400d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  14  1..........SLNLTIGTSFNPPFEVWSNNSSLYGFDIDLMQEICRRLHAT-CTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDS-----KISTFDDLHGKKIGVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF.................. 228
19 -74.300d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  23  1...........KELVVGTDSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWT-YKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANN----TTIKSIDDLNGKVIAAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKY--GIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSEP.............. 222
20 -74.300d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  21  1.ESKLDQILSSGELKVGTTDWDPMAMKDPTNKYKGFDIDVMQELAKDMGVK-ITFVPTEWKTIVSGITAGRYDIST-SVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKKYSTWKSLNN-KDVTIATTLGTSQEEKAKEF-FPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAF---LAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKS............... 235
21 -74.000d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20  1.ESRLDRILESGVLRVATTDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAK-LVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQI-DQPGVTAIVNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLL---PRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL.................. 232
22 -73.500d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  1.......IVEGRTLNVAVSASPPMLFKSADGKLQGIDLELFSSYCQSRHCK-LNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNEL---NKYSIGYPRGMAYSDLIKND-YSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQ---LGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM.................. 228
23 -73.100d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  19  2........DRHRTIVVGGDDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMT-VEFRLGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP----PAAGLEDLRGRKVALHRDGIMHEYLAERG-YGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRY--GYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVLE.............. 227
24 -72.400d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  2..NSLDKIKQNGVVRIGVGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS-----NITSVEDLKDKTLLLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDV---IAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG. 248
25 -72.400d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  16  1.............LKVGVVGNPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATPLFRSVGDL---KNKEVAVVRDTTAVDWANF---YQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPY--GFVLKE-NSPLQKTINVEMLNLLYSRVIAEFTERWLG................. 221
26 -70.500d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  18  1...........KTVTLATVTTNPFSY-EKKGKLTGYDIEVAKEVFKASDKYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDS-----DIKSYNDIAGHSTQVVQGNTTVPMLQKFNKNHENNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSDQKPY-VYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGS............... 229
27 -70.200d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  12  1..........VQTITVGTGQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSN---NSINSTKDLAGKRVITSATSNGALVLKKINEEQEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAK---VYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQ.......... 235
28 -69.500d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  20  1.EDILERSKSTNEIIWGVYDTRLFGMMDESRTVQGFDVDIAKAITKKILGDKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGS-----QIKSVDDLNASTVLAVKGSTSAANIRQH-APDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPE--YELVGGTFTNEPY--GIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETEGK........... 239
29 -66.000d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  16  1......ARLKGITLRIGVESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVQLAPPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLRESGGSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYC-NLTLVGEDFDKSTF--GIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTK............... 243
30 -65.000d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  23  1..GKLESIKSKGQLIVGVNDVPHYALLDQTGEIKGFEVDVAKLLAKSILGDKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEK-----KYKSLADMKGANIGVAQAATTKKAIGEAAKKDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDD----KSEILPDSFEPQSY--GIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG.................. 230
31 -50.800d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  15  5SAREQQWMADHPVVKVAVLLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMA-GALFVNSARESFLSFSRPYVRNGMVIVTRQDPD----APVDADHLDGRTVALVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASAL-DLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW................... 234
32 -49.000d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  36PMTNDSSMLDRLFSSLHSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFD--AWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTEGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGY--GIGLPPNS-PLTSNISELISQYKSHGFMDVLHDKWYKVVP.............. 289
33 -44.000d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  3.............LSIVTLEEAPFVIVEDKKCCKGFCIDILKKLSRTVKFT--KKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGS-PWKRQIDLALLQFVGDGEMEELETLWLTGI-----------CHA. 280
34 -35.900d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  19  2.........IGRHLRLGSVEEQPFMFFATEGCWSGMVNDMVVKLSEDLGFTALNKTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGT-TLNQVLELLDQDKYKWGVIGSRHPETLLKTHRDSRDEGVELKDLNHAIETLRGGL-FVFIDEGPVLAHNLIS----DCDVFSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWS.................. 245
35 -31.800d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  3.............LKIVTIHQEPFVYVKPPQCCYGFCIDLLIKLARTMNFTYEVHLVADWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ--KCDLVTTGELFFRS--GFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQE----------CDS. 289
36 -30.900d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  1.........GGVVLRVVTVLEEPFVMVSENKKYQGFSIDVLDALSNYLGFNYEIYVAPDWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVMYSQMWRMINRSNGSENNVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIAL---QHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN............... 260
37 -30.500d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  1..........NKTVVVTTILESPYVMMKKNERYEGYCVDLAAEIAKHCGFKARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP--IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFD-VFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPK---GSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGE---------CGS. 261
38 -29.800d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15  2............RYTVATRVGKPYFSWRENERFEGYAVDLIYMLAQECKFDSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTD--IGSLHDLVDQNKVQFGTIRGGATSVYFSESNDTDNRMAWNKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEK---HYGIAVPLN-ADFRSNLSVGILRLSERGELFKLRNKWFNS................ 255
39 -18.900d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  11  2DNKALLSHVDINNVVCAM----PLPYTRL------YEGLASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKG-----------ESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDSYHESLQRIVKGDVDAVIWNVVAENE-LTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAALLAHQQRVVSGEQEPSY................... 228
40 -10.900d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  11  1..........TGRLNIAVPTIAPYLL-----------PRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLE----DDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVRE---VRLAVRQDYEQLIGLLRSAVPSDMHKLQTGQHL...................... 218
41 -10.400d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  11  1.......MPETANIKLGYVEAAPLIIAQEKG------------FFAKYGMTGVEVSKANWASARDNVTIGSQGGGIDGGQWTNGNKVPMYVLAQLITQGNGIAVAPMHEGK-DYIKGFNKTNGRKFKAAHTFPNVYWFAAGGVDPDTDIDLLAVPETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIWVDKNPKATKALLKGIME................................. 242
42 -9.630d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  9  3........DTSGVLTIATTHTQARYSL----------PEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLV---AFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQRNYVWRFLELCNAGLSVEDIKRQVME.................... 219
43 -9.400d3jv9a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  9  1..........EGAFKLGLFTVAPYLL-----------PKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIV----TEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQVGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFPKALSAMKAAIMQSQLHG............................ 211
44 -9.340d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  4..........SGPLHIGLPTVGPYLL-----------PHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFI----EVPLFDEPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPAIKPEPRRTI---GLVYRPGSEQLAEAIRARMDG................................. 209
45 -9.190d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}  ali model 3D-neighbors follow..  11  4.........DKGSLYVATTHTQARYAL----------PGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADF---AIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRR-STFLRSYMYDFIQRFAPH............................. 207
46 -9.180d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  15  2...........GELSVAYFGTPIYRSL----------PLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIE----IVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFFKHAGIEPRIARVVEDATAALALTMAG------AASSIVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPILARFVEHVRRSAKD............................. 205
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.