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Query: d2rlda1 a.29.16.1 (A:1-115) Uncharacterized protein BT0352 {Bacteroides thetaiotaomicron [TaxId: 818]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MREDMKDNVVKDKSLEFAVRIVNLYKFLVNEQKEFVMSKQILRSGTSIGANIREAEQAQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESINNDSTEINKLLISIIKLast
1 -71.500d2rlda1 a.29.16.1 (A:1-115) Uncharacterized protein BT0352 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors  100  1MREDMKDNVVKDKSLEFAVRIVNLYKFLVNEQKEFVMSKQILRSGTSIGANIREAEQAQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESINNDSTEINKLLISIIK 115
2 -57.300d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors follow..  19  1..RPHERLDAWRDSMELVEMIYRLTEVFPDQER-YGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMN 112
3 -7.030d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  3........NLASRNAGFINKRFD--GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQE----RDADLQAICSMGINLFRVLMTYLK 104
4 -6.270d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  22.................AAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQVAPTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELL. 125
5 -5.750d1aepa_ a.63.1.1 (A:) Apolipophorin-III {Migratory locust (Locusta migratoria) [TaxId: 7004]}  ali model 3D-neighbors follow..  16  36.........LTEQANAFKTKIAEVTTSLKQEAEKHSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGH--QWQDIATKTQASAQEAWAPVQSALQEAAE....... 134
6 -5.650d2x1la2 a.27.1.0 (A:354-512) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  6........NLAQRSLSMVAKNLGVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLGAANRYFSAQEPW-VLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQ 113
7 -5.480d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  10  35.....KGNDIIAAAKRMALLMAEMSRLVGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVK--SEQATEMLVHNAQNLMQSVKETVR 159
8 -5.450d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}  ali model 3D-neighbors follow..  11  21....................................IDSMSLKWAVEMNI-IQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVR... 98
9 -5.350d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  13  10.......................TDSELPADHVYFKFRSEIEAAEAYLGLAISEGIKVRETREILDIIDTVYNSLSDPESKL................................. 68
10 -5.250d1um1a1 b.36.1.1 (A:8-104) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  1..................................YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLYLRAVDLIRHGGKKMR 82

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.