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Query: d2vglm1 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Norway rat (Rattus norvegicus) [TaxId: 10116]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQLast
1 -73.900d2vglm1 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly protein AP50) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors  100  1MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQ 141
2 -64.400d2jkri_ d.110.4.2 (I:) Sigma2 adaptin (clathrin coat assembly protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  1MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE. 142
3 -13.300d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEATLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFL........................ 118
4 -10.100d3bw6a1 d.110.4.1 (A:1-135) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  15..KALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALMKQLDTYIS........................ 130
5 -9.190d1ifqa1 d.110.4.1 (A:2-127) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  1.VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDFIQKTKK........................ 123
6 -9.190d6b9xc_ d.110.7.1 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18.LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDKNKSIICYYNTYQVVQFNRLPLVVSFIASSSANTGLIVSLEKELAPLFEELRQVVE............................................ 121
7 -8.070d6b9xb1 d.110.7.1 (B:1-125) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  19.VQSTLLLNNEG-SLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQLMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS.......................................... 125
8 -7.720d2j3wa_ d.110.4.3 (A:) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  5GSFYFVIVGHHDNPVFEMEFLPPGKAAALDLVDENMWLSNNMYLKTVDKFNEWFVAFVTAGHMRFIMLHDVRQED----GIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQ........................ 133
9 -5.730d1fjgt_ a.7.6.1 (T:) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  26.................................................................................IKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMR...... 79
10 -5.620d3ubya1 b.46.1.2 (A:84-293) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  19FLGQVLVRRPNGTELRGRIVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGL..................................................... 107

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.