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Query: d2xt9b_ b.26.1.0 (B:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PSGSALLVVKRGPNAGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLTLast
1 -57.900d2xt9b_ b.26.1.0 (B:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors  100  1PSGSALLVVKRGPNAGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLT 97
2 -52.000d3po8a1 b.26.1.0 (A:3-97) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  31  2....TSVTLQLDDGSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQEWQLADGDVIRLGHSEIIV.. 92
3 -51.200d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  33  1.SGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVLNDGDHIRICDHEFTFQI 97
4 -48.500d2affa_ b.26.1.2 (A:) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  1.PTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQVNGSVIDEPVLKHGDVITIIDRSFRYEN 97
5 -45.600d1mzka1 b.26.1.2 (A:180-298) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  31  1..SWLFLEVIAGPAIGLQHAVNSTSVKLGRVSPSDLALKDSEVSGKHAQITWNSTKWELVDMGSLNGTLVNSHSISHPELASDDIITLGTTTKVYVR 113
6 -43.600d1uhta1 b.26.1.2 (A:8-112) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  28  3.TPSLRLVFVKGPREGDALDYKPSTIRVGRIVGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDSVNLGDGDVIKLGEYTSILVN 103
7 -41.700d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  20  13GQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISLSNKHFQILLGEDGNLLLNDISTNGTWLNGQKVSNQLLSQGDEITVGVGVESD.. 111
8 -41.400d3gqsa_ b.26.1.0 (A:) automated matches {Chlamydia trachomatis [TaxId: 272561]}  ali model 3D-neighbors follow..  30  1..SRFLLKVLAGANIGAEFHLDSGTYIVGSDPQADIVLSDMSISRQHAKIIIGNDNVLIEDLGSKNGVIVEGRKIEQSTLSANQVVALGTTLFLLVD 99
9 -37.600d2piea2 b.26.1.2 (A:13-140) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  2.GGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVPLMISRNHCVLKQNEGQWTIMDNKSLNGVWLNRARLEPYSIHQGDYIQLGVPLENKEN 105
10 -34.300d1lgqa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  5....GRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFSNKLVSGDHCRIVVDSGQVTLEDT-STSGTVINKLKVQTCPLQTGDVIYLVYRKNEPEH 102
11 -33.500d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  5........LWALQDGFANLECVNDNYWFGRDKSCEYCFDEPTYSKKHFRIFRENSYIAYIEDHSGNGTFVNTELVKRRPLNNNSEIALSLSRNKVFV 109
12 -32.300d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3`-phosphatase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1..GRLWLESPPGEAPPIFLPSDGQALVLGRGPLTQV--TDRKCSRTQVELVADETRTVAVKQLGVNPSTTGTQELKPGSLGVGDTLYLVNGLHPL.. 95
13 -31.500d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  6....LTLKPLPDSIIQESLEIGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAIWYCHT-GTNVSYLNNNRMIQFLLQDGDEIKII........ 109
14 -29.400d3kt9a_ b.26.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  2...MRVCWLVRQDSRHQRIRLHLEAVVIGRGPETKI--TDKKCSRQQVQLKAENKGYVKVKQVGVNPTSIDSVVIGKVKLQPGQVLHMVNELYPY.. 96
15 -21.800d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  22  1PEKLPYLVELSPDGSDSRYRLQLSVTEVGTFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISETMLQSGMRLQFGTSHV.... 101
16 -19.100d3fm8a_ b.26.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  21......................KEHTLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNGSSVSSIQLHHGDRILWGNNHF.... 92
17 -14.900d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  19..................YHIKDGVTRVGQ-VDMDIKLTGQFIREQHCLFRSDGEVVVTLEPCEGAETYVNGKLVTELVLKSGNRIVMGKNHV.... 97
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.