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Query: d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AISGSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQLast
1 -109.000d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors  100  1AISGSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ 240
2 -95.500d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  26  2...VRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGIT-EERARAVDFTNPHYCTGGVIVSRKGG-PRTAKDLQGKVVGVQVGTTYMEAAQKIIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQER--VAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK 236
3 -95.000d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  1.TSGDNWSKYQSNKSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLIWNGYSAT-DERREKVAFSNSYMKNEQVLVTKKSSGITTAKDMTGKTLGAQAGSSGYADFEAANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNYNVFTVGLETEA--FAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVATK 246
4 -93.200d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  25  1........ASVSARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMT-PKREQQVSFSQPYYEGLSAVVVTRKGAYHTFADLKGKKVGLENGTTHQRYLQDKAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT...... 228
5 -92.100d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  20  1.............EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSIT-PSRLKEILMIPYYGEEIKHLVLFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN.... 224
6 -91.900d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  24  1..............TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSIT-DERDEVIDFTQNYIPPTASSYVATSDG----ADLSGI-VAAQTATIQAGYIAESGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGG--GVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAV. 217
7 -90.700d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  25  1..........ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSIT-DKRQQEIAFSDKLYAADSRLIAAKGSPQPTLESLKGKHVGVLQGSTQEAYANDKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKYAFAGPSVKDKKDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD 238
8 -90.100d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  34  1....TGWEQIKDKGKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVT-KDREEKFAFSTPYKYSYGTAIVRKDDGIKTLKDLKGKKAAGAATTVYMEVARKYGEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYMPN-KQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSK 241
9 -89.800d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  25  1.........GATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITIT-DERKQSYDFSDPYFEATQVILVKQGSPVKNALDLKGKTIGVQNATTGQEAAEKKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLD 231
10 -89.700d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  20  1........ATPKKDVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADGMMSGMSIT-DARKQVFDYGSPYYSSNLTIATSSTDDIKSWKDLKGKTLGAKNGTASFDYLNAYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQK--FATPIKPIPDGQ--YGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESDA... 230
11 -89.100d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  27  2.............KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQ-PAREKVIAFSRPYLLTPMTFLTTADSPLKFTKIFEGVKFGVQAGTSHEAFMKQMSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGGGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDAS.. 253
12 -88.300d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  25  1.....AIDEIKSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTIT-EERKKVVAFSDPYFDAGQVIVVRKDSDPKTYEDLVGKTVAVQIGTTGDIEVSKDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPD--LVISSGVLSSEQ--YGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS...... 226
13 -88.200d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  22  1............SLNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIIT-DERKKHFIFSLPYMESNSQYITTVDSKISTFDDLHGKKIGVRKGTPYARQVLSENNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAKYKLIGKKISIGE-GYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF....... 228
14 -87.500d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  24  1.............KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIK-EERRKAIDFSDPYYDSGLAAMVQANNTIKSIDDLNGKVIAAKTGTATIDWIKAHPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDK--YGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSE.... 221
15 -87.400d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  23  1............RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTIS-QERNLRVNFVEPYIVVGQSLLVKKGLEVKSYKDLDKPTLVTKFGVSAEYAAKRKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEP--LGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLE 231
16 -86.800d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  25  1......IEAIKSKGKLVVALNPDFAPFEYQDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSKT-DERSKVFDFSTPYYTAKNKLIVKKSDTYQSVNDLAQKKVGAQKGSIQETMAKDQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDD-SYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASIEK. 238
17 -86.400d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  25  1.............KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGANNISYT-KERANKYLYSNPTASNPLVLVVPKDSDIKSYNDIAGHSTQVVQGNTTVPMLQKFNKNNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSDQKPY-VYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYLPD 233
18 -85.700d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  26  2..........DRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVL-QGISWS-EKRARQIDFTPPHTIVYHAIFARRDSPAAGLEDLRGRKVALHRDGIMHEYLAERGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQR--YGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVL.... 226
19 -85.200d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  28  2.............QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKS-KEREKKFLFNDVAYNNFPLQLTDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTS-AIKEKVVGDVLSNAK--VYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKE 234
20 -85.100d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  26  1....DNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKVVFTGQEFSALMPSVANGRFDVAAAAIGTT-AKRKETVDFSDGYLAGFLSVLTSEAG-ITDAAGLKGKRLGVVQGTLQEIYAEKNGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAV---NIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPA 236
21 -84.600d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  16  1.........IVEGRTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISIT-DKRKKVIDFSEPYYINSFYLVSMANHKLNNLNELNKYSIGYPRGMAYSDLIKNSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKM-PIESRYVFKNVDQ--LGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM....... 228
22 -83.300d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  23  1..............PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIESSVPELISAIKDNKVNLGIAAISIT-AEREQNFDFSLPIFASGLQIMVRNLEDIRSIDDLPGKVVATTAGSTAATYLREHHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIIL---PNNSPYRKPINQALLNLKENGTYQSLYDKWFD...... 219
23 -80.200d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  21  1...............LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVRNSISAGITAVAEGELDILIGPISVTPERAAEGITFTQPYFSSGIGLLIPGTATFRSVGDLKNKEVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVL---KENSPLQKTINVEMLNLLYSRVIAEFTERWLG...... 221
24 -79.500d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  23  1...EDILERSKSTNEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKINGKTEFVEVTSKTRIPLLKNGNIDAIIATMTIT-DERKKQVDFSDVYFDAGQALLVKKGSQIKSVDDLNASTVLAVKGSTSAANIRQHDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPE--YELVGGTFTNEP--YGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETEGK 239
25 -79.400d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  22  2...ENKLEELKEQGFARIAIA-NEPPFTAVGADGKVSGAAPDVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAITAGLFMK-PERCAAVAYSQPILCDAEAFALKKGNSYKDIADNPDAKIGAPGGGTEEKLALEAGDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAM 245
26 -78.500d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  21  2....NSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLVEAANRVEFLKSNKVDIILANFTQT-PQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTADAYFTQNNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGI---KELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDD 238
27 -77.800d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  13  1........ARLKGITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADVQNTSYTGLVLALANGDYDIAIGDITVT-SARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKYNRIGIRIGTAGEDYYLRESRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYC-NLTLVGEDFDKS--TFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKAC.. 245
28 -77.200d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20  1...ESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISIN-LERQRQAYFSIPYLRDGKTPITLCSEEFQTLEQIDGVTAIVNPGGTNEKFARAKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLL---PRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL....... 232
29 -76.900d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  23  1...ESKLDQILSSGELKVGTTGDWDPMAMKDATNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYDIST-SVTKT-PKRAEVAGFTDSYYKYGTVPLVLKKNKYSTWKSLNNKTIATTLGTSQEEKAKEPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQL---AIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL... 236
30 -72.500d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  1....GKLESIKSKGQLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTIT-PERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTKKAIGEADVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDK----SEILPDSFEPQS--YGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG....... 230
31 -56.900d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  38....TNDSSMLDRLFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFDLKNGHWTGLVGDLLSGTANMAVTSFSIN-TARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDQGFRFGTVRESSAEDYVRQSYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIE--GYGIGLPPNS-PLTSNISELISQYKSHGFMDVLHDKWYKVV.... 288
32 -54.200d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  18  3AYSAREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVTVEELIAKLRSGEADMAGA--LFVNSARESFLSFSRPYVRNGMVIVTRQDPDPVDADHLDGRTVALVRNSAAIPLLQRRQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASA-LDLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW........ 234
33 -46.300d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  45...........................EGMNVKKCCKGFCIDILKKLSRTVKFTYDLVNNVWNGMIGEVVYQRAVMAVGSLTIN-EERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRFGTVPNGSTERNIRNNYPYMFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTGI.... 277
34 -33.800d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  13  2...........IGRHLRLGSVEE-QPFMFFATEGCWSGMVNDMVVKLSEDLGFTYEYIQPDWNGMIRDLLDDKTDMIAIDLSTN-SARKSAIDYSFPFMDAGIKAVVKGGTTLNQVLELGSRHPETLLKTHRDSRYSRLVDEGVELKDLNHAIETLRGGL-FVFIDEGPVLAHNLIS--DCDVFSVGEEF--QSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWS....... 245
35 -32.100d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  55..............................TVPQCCYGFCIDLLIKLARTMNFTYEVHLVAWNGMMGELLSGQADMIVAPLTIN-NERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVD-MEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ--KCDLVTTGELFFRS--GFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQ.... 285
36 -32.000d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  1...........GGVVLRVVT----EPFNVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVATWNGLVGELVFKRADIGISALTIT-PDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSRMINRSNGSENNVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIAL---QHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN.... 260
37 -31.800d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  16  2..............RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNFEPVRWDGIIRQLIDNNAQIGICDLTIT--ARRSVVDFTVPFMQLGISILSYKGTDIGSLHDL--SESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN-----ELTQIGESFGEKHYGIAVPLNAD-FRSNLSVGILRLSERGELFKLRNKWFNS..... 255
38 -30.700d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  1............NKTVVVTT----SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGWNGMVGELVYGKADIAIAPLTIT--VREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQAYGTLDSGSTKEFFRRSKIAVFDKRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPK---GSSLGNAVNLAVLKLNEQGLLDKLKNKWW....... 253
39 -17.800d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  9  27......................................YEGLASGLKAQFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSSYLSQNNLCIALELGPHTYVGEHQLICRKG------ESGNVKRVGLDSRSADQKIMTDVFFGDSDVESYHESLQRIVKGDVDAVIWNVVAENE-LTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDAHQQRVVSGEQEPSY........ 228
40 -10.300d5i7ia_ c.94.1.0 (A:) automated matches {Uncultured marine [TaxId: 56765]}  ali model 3D-neighbors follow..  14  24............................WSEKVLAESNGEIKVEIYPAMQLGGKPP-------QLVDQVRDGVVDIVWTVAGYTPGRFPHLEAFELPFFCHAPGKIHTKEKVIKSAADLNGMKMRGP-TRVITKMLEGLGATPVGMP-VPAVAGALSKGVIDGMVVPWEIMPSFKLHELTKAHTTVSGSRGLYTTPFLFLMNKAKESLSDEHKKVIDNNAGLALAKLAGQLWDGFE.... 255
41 -10.300d3jv9a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  10  1............EGAFKLGLIFTVAPYLL------------KLIVSLRRTAKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPLYDEPFF-----VIVPKGHSFEELDAVSPRMLGLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRH-SVLPATALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFPKALSAMKAAIMQSQLHG................. 211
42 -10.000d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  13  1.........SLNREYILIGT-------------GSMTGVYYPIGGSICRFIKIICSISSTTGS--LNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLHKEYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKSSEQAQALCDNKIDVMV........................................................................... 173
43 -9.920d5b7ha1 c.94.1.0 (A:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}  ali model 3D-neighbors follow..  13  12............QGQLKLGCIPTIAPFLL------------DLVQEINQRFQLNLLLREDTTTNLLTALRHGELDVLILALPVEIDGMESRVVGQDPFK-----MVISRHQAGAIKVPIKYDDLPDESVFLLEKKLTDKEKINPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSSRSKTFNQLAEVVSEL..................... 215
44 -9.900d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  6  7...............................TKGRIQKQVTKLLENADYDVE-DLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRVTKKYFAQKQEDIEIIKLEGSVELGPVVGLADAIV-DIVETGNTLSANGLEVIEKI------DISTRMIVNKSSFKFKKDKIIEMVERLED................... 204
45 -9.680d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  18  1...........AQEFITIGS-------------GSTTGVYFPVATGIAKLVNDANVGIRANARSTINAINAGEFEMALAQNDIAEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTSASQGIQLMQDKRADALF........................................................................... 169
46 -9.650d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  8...............................NKGALSEPATEILAEAGYRRR-NVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLVRKDLATKGIEATVIRLDGAVEISVQLGVADAIA-DVVGSGRTLSQH---DLVAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQG................... 205
47 -9.520d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  4............SGPLHIGLIPTVGPYLL------------HIIPMLHQTFKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFIEVPLFDEPML-----LAIYEDHPWANREAVPMADLAGEKLLMLEDFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPAIKPEPRRT---IGLVYRPGSRSRYEQLAEAIRARMDG.................. 209
48 -9.350d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  11  1............TGRLNIAVLPTIAPYLL------------RVFPIWKKELGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLEDDLLYYEEFL-----GYVSRCEPLFEQDVIRTTEVGHCFRDQLVRFCQMKGLHERQTAGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVRE---VRLAVRQDYRKLREQLIGLLRSAVPS.................. 207
49 -9.250d4p56a_ c.94.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  13  6.....................SSWLPPTHAVVADFLMPWGEEIRKATDGRVTLRL--AVTNPAGHFDAVRDGLVDVTFVSHAYYPGRFQLTKFAVLPFYAHGPGIAFTTSKPVKQIGDFQGLKIRVG-GGMAADVAKAVGASPIAKP-APESYELLSTGVADGVFFPAESLVSFKLDSIIRHATEFPGGLYSDTHAVIINRDA--ARLSKQDQDTLVRLSGRHLAELAGRAWDTHD.... 252
50 -9.170d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  12  1.........MPETANIKLGY--EAAPLIIAQEKGFFAKYGMTGVEVS----------KQANWASARDNVTIGSQGGGIDGEGIITNGNKVPMYVLAQLITQGNGIAVKAADYIKGFNKTNGRKFKAAHNVNQDFWIRDTDIDLLAVP--AETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIWVDKNPKATKALLKGIMEAQQ................... 245
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.