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Query: d2zska1 c.78.2.0 (A:1-114) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGLast
1 -70.500d2zska1 c.78.2.0 (A:1-114) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors  100  1MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRG 114
2 -67.700d5hqta1 c.78.2.0 (A:1-116) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  33  1MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAG 116
3 -64.700d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  26  1MKTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYIGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELG 115
4 -16.500d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  22  1FKKAGLLATTGTIVSGVYEKEFSKYTPTEDEQKDVMRGIYEGVK-------AGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQ--DDLKVPLIDPMDVIAEVAVK.. 108
5 -16.400d5hqta2 c.78.2.0 (A:117-230) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  13  1MTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQIIFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPE--ERSVLPVFDTAAIHAEDAVA.. 110
6 -15.700d2zska2 c.78.2.0 (A:115-226) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  16  1VRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNL--KNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQ--GDVSVEVFDSAEIHMRKLIE.. 108
7 -14.000d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}  ali model 3D-neighbors follow..  24  3...IGIVGGLT----------VLKAIRNRYRKVD----IVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYLERLKKEINVPVFGVIEPGVKEALKK. 103
8 -10.300d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}  ali model 3D-neighbors follow..  12  2.KKIGVIGTPATVKSGAYQRKLEEG--------GADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGKIDTLILGCTHYPLLKKEIKKFLDAEVVDSSEALSLSLHN.. 105
9 -8.370d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  5LRLVGVTGTNGKTTTTQLLAQWSQLLGEISA-----VMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSS-HGLVQHRVAALKFAASVFTNLSRDHLDYHG 112
10 -7.270d3e3ma1 c.93.1.0 (A:69-345) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  14  1....GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREE-------------QLVETMLRRRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPAH...... 91
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.