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Query: d2zska2 c.78.2.0 (A:115-226) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASELast
1 -69.100d2zska2 c.78.2.0 (A:115-226) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors  100  1VRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASE 112
2 -65.300d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  30  1FKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLKVPLIDPMDVIAEVAVKVALE 112
3 -59.800d5hqta2 c.78.2.0 (A:117-230) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  33  1MTRVALLGTRYTMEQDFYRGRLEQFSINCLIPEADERAKINQIIFEELCLGQTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIHAEDAVAFMLS 114
4 -23.300d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}  ali model 3D-neighbors follow..  25  2.KKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPLFAPLAE------EGLLEGEITRKVVEHYLKEFKGKIDTLILGCTHYPLLIKKFLGDAEVVDSSEALSLSLHNFIKD 109
5 -15.900d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  15  1MKTIGILGGMGPLATAELFRRIVIK-----TPAKRDQEHPKVIIFNAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDKAIKIPIISMIEETAKKVKE.... 113
6 -15.700d2zska1 c.78.2.0 (A:1-114) automated matches {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  16  1MKKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEEGRKKILINAAKALERAGAELIAFAANTPHLVFDDREVNVPMVSIIDAVAEEILK.... 112
7 -15.500d5hqta1 c.78.2.0 (A:1-116) automated matches {Escherichia coli [TaxId: 1330457]}  ali model 3D-neighbors follow..  12  1MKTIGLLGGMSWESTIPYYRLINEG-----IKQRLGGLHSAQVLLHSQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADASRCTLPFLHIADATGRAITG.... 114
8 -7.110d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}  ali model 3D-neighbors follow..  12  10...VGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSK---------------DTIIRYSLECAGFLKDKGVDIIVVACSAYALERLKKEINVPVFGVIEPGVKEALKKS.. 104
9 -6.720d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVI........... 119
10 -6.660d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  12  1MARVAIPSVGKDLSSMVSDRFARAEYFIIYDTESGNVEVVENTIADAHGTGP---------KVVQSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSE 103

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;