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Query: d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLast
1 -107.000d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors  100  1EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN 224
2 -97.300d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  28  6RTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YHTFADLKGKKVGLENGTTHQRYLQDQQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERADPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT.. 228
3 -97.100d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  26  4QTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFN 234
4 -95.300d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  16  6DVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFAT----PIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESD 229
5 -94.500d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  29  9GYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDRPKTYEDLVGKTVAVQIGTTGDIEVSKYDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLVI----SSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS.. 226
6 -94.300d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  23  12GEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG--PRTAKDLQGKVVGVQVGTTYMEAAQKIGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQV--GELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED 232
7 -93.900d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  20  13KSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVT-KKSSGITTAKDMTGKTLGAQAGSSGYADFEAVANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNDYNV-FTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGED 242
8 -93.700d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  23  1KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKALKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVA--GAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSE 221
9 -92.100d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  20  14GTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVA-HNDSNIKSIADIKGVKTAQSLTSNYGEKAKA-AGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD 236
10 -92.000d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  24  1.TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG-----ADLSGI-VAAQTATIQAGYIAE-SGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGE--LMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGED 214
11 -91.900d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  21  2KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKFTKIFEGVKFGVQAGTSHEAFMKQMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFRMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYD 251
12 -91.700d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  21  2LNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLHGKKIGVRKGTPYARQVLSNRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLILIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF... 228
13 -90.900d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  22  8GKLVVALNPDFAPFEYVDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDATYQSVNDLAQKKVGAQKGSIQETMAKDLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADL-NFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKAS 235
14 -90.600d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  23  5KKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILV-KQGSPVKNALDLKGKTIGVQNATTGQEAAEKLKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNS-ELKAKVDEALKNVINSGKYTEIYKKWFGKE 227
15 -89.600d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  21  2GELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEGVKSYKDLDKPTLVTKFGVSAEYAAKRFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHL--DTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDT 227
16 -89.400d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  15  5RTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKTLNNLNELNKYSIGYPRGMAYSDLIKNYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKM---PIESRYVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM... 228
17 -88.900d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  17  10GKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDSGIKTLKDLKGKKAAGAATTVYMEVARKYAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHP-DIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKA 237
18 -88.400d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  20  5RTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVD-VLQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPV--ARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVL 226
19 -87.800d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  19  10TTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG--ITDAAGLKGKRLGVVQGTLQEIYAEKFAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALK---IAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGT 232
20 -85.800d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  18  2QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSA---IKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGAD 230
21 -83.000d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  19  1.PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIESSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESDIRSIDDLPGKVVATTAGSTAATYLRE-HHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIV--GSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD.. 219
22 -81.900d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  18  1KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVV-PKDSDIKSYNDIAGHSTQVVQGNTTVPMLQKFNKKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSD-QKPYVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGS 229
23 -80.000d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  18  6ITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADVQNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM-RKGTLIDGMDDLKYNRIGIRIGTAGEDYYLREGSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYC---NLTLVGEDFDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTK 243
24 -79.000d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  17  1..LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEVRQNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATLFRSVGDLKNKEVAVVRDTTAVDWANF-YQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVT--EIRVSLEPYGFVLKENS-PLQKTINVEMLNLLYSRVIAEFTERWLG.. 221
25 -78.800d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  17  11GELKVGTTGDWDPMAMKDATNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYD-ISTSVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNKKYSTWKSLNNKTIATTLGTSQEEKAKEFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLA---IVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKS 235
26 -78.700d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  17  12GFARIAI-ANEPPFTAVGADGKVSGAAPDVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNKSYKDIADNPDAKIGAPGGGTEEKLALEVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSA 241
27 -77.900d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  11GVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCEEARFQTLEQIDGVTAIVNPGGTNEKFARALKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCA--VHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL... 232
28 -77.900d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  20  11NEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKINGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQ-IKSVDDLNASTVLAVKGSTSAANIRQAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYEL----VGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNE 235
29 -77.500d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  16  12.VVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-ITSVEDLKDKTLLLNKGTTADAYFTQYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPD---FKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAH 234
30 -72.400d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  11.QLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-YKSLADMKGANIGVAQAATTKKAIGEAADVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEI------LPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG... 230
31 -61.700d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  47LFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFDLKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHHPSSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTV--GKPFAIEGYGIGLPPNSP-LTSNISELISQYKSHGFMDVLHDKWYKVV 288
32 -55.400d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  14  16PVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVTVEELIAKLRSGEAD-MAGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRY-FAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW.... 234
33 -50.600d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  1NHLSIVTLEE-APFEGMNVKKCCKGFCIDILKKLSRTVKFTYDLVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRRFGTVPNGSTERNIRNHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLT.. 275
34 -40.400d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  17  4RHLRLGSVEE-QPFMFFEGNDCWSGMVNDMVVKLSEDLGFTYEYITNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGTTLNQVLELLDQKWGVIGSRHPETLLKTHRDSRYSRLVDEGVELKDLNHAGLFVFIDEGPVLAHNLISDCDV----FSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWS... 245
35 -38.700d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  55.................TVPQCCYGFCIDLLIKLARTMNFTYEVHLVAWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDL----VTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQ 285
36 -35.300d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  13  2.RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNFEPVRWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKV-IRGGATSVYFSESNFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCEL----TQIGESFGEKHYGIAVPLNAD-FRSNLSVGILRLSERGELFKLRNKWFNS. 255
37 -34.800d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  3VVLRVVTVLE-EPFNVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVATWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTV--GNTVADRGYGIALQHGSP-YRDVFSQRILELQQSGDMDILKHKWWPKN 260
38 -33.000d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  2KTVVVTTILE-SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIALDSGSTKEFFRRSSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKP---CDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWWYDK 256
39 -18.200d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  10  27.........................YEGLASGLKAQFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKG-------ESGNVKRVGLDSRSADQKIMTDFGDSDVERVDSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAV-VLTRVDDYPMQQLLRAVVDAHQQRVVSGEQEPSY.... 228
40 -9.390d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  8  5ANIKLGY-VEAAPLIIAQEKGFFAKYGMTGVEVS----------KQANWASARDNVTIGSQGGGIDGLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHNVNQDFWIRYWTDIDLLAVPP-AETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIWVDKNPKATKALLKGIMEAQQ............... 245
41 -9.030d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  9  6................VPNKGALSEPATEILAEAGYRRR-NVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLVRKDLAT-KGIEATVIRLDGAVEISVQLGVADAIA-DVVGSGRTLSQHDLVAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQGVVF............... 208
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.