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Query: d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RDRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVLQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVLEPLast
1 -109.000d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors  100  1RDRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVLQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVLEP 228
2 -92.200d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  21  3.VSARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA-YHTFADLKGKKVGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIRASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT.... 228
3 -91.100d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  27  9.KRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVASHGITEERARAVDFTNPHYCTGGVIVSRKGG--PRTAKDLQGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGED.. 232
4 -91.000d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  21  3.PKKDVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHAKGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQ--KFATPIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESD.. 229
5 -90.300d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  22  1....KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSEP. 222
6 -88.400d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  20  1....EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSL-SEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN.. 224
7 -87.800d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  21  1.ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFD.... 232
8 -87.600d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  20  10.QSNKSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLINGYSATDERREKVAFSNSYMKNEQVLVTKKSSG-ITTAKDMTGKTLGAQAGSSGYADFEANVANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGLNDYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGED.. 242
9 -87.000d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  19  1...RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEGVKSYKDLDKPELVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDT.. 227
10 -86.900d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  25  1.....TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG-----ADLSGI-VAAQTATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGED.. 214
11 -86.000d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  25  6.KSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDRPKTYEDLVGKTVAVQIGTTGDIEVSKY-DGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNP--DLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS.... 226
12 -85.700d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  26  11.NNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVNQVGLTPERQATFDKSEPYSWSGAVLVAHNDSN-IKSIADIKGVKTAQSLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD.. 236
13 -85.000d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  21  7.KDKGKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDSGIKTLKDLKGKKAAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKAD. 238
14 -85.000d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  19  2....KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKFTKIFEGVKFGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDSP 254
15 -85.000d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  16  1...SLNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLHGKKIGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF..... 228
16 -84.000d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  18  5.KSKGKLVVALNPDFAPFEYVDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLTYQSVNDLAQKKVGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKAS.. 235
17 -83.200d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  20  2.VEGRTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKTLNNLNELNKYSIGYPRGMAYSDLIKNDYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKK-MPIESRYVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM..... 228
18 -82.500d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  21  7.IDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKVVFTGQEFSALMPSVANGRFDVAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG--ITDAAGLKGKRLGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKI-AVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTP. 233
19 -81.700d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  19  2....QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMDFSNLLVSLGAGKVDIVHQMEKSKEREKKFLFNDVAYNNFPLLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSA-IKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGAD.. 230
20 -81.300d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  24  2.ATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDGISGITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNALDLKGKTIGVQNATTGQEAAEKLFKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKE.. 227
21 -80.100d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  20  1.....PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLEYSSVPELISAIKDNKVNLIAAISITAEREQNFDFSLPIFASGLQIMVRNLESDIRSIDDLPGKVVATTAGSTAATYLREH--HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD.... 219
22 -79.400d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  19  1....KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGNNISYTKERANKYLYSNPTASNPLVLVVPKDSD-IKSYNDIAGHSTQVVQGNTTVPMLQKFNKNKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSDQKPVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGS.. 229
23 -78.300d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  16  8.LSSGELKVGTTGDWDPMAMKDATNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYDISTSVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNKKYSTWKSLNNKTIATTLGTSQEEKAKEFFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYP-QLAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLK... 234
24 -77.100d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  18  8.KSTNEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKINGKTEFVEVTSKTRIPLLKNGNIDAIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQ-IKSVDDLNASTVLAVKGSTSAANIRQHAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENP--EYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETE 237
25 -76.900d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  16  4..KGITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADVQNTSYTGLVLALANGDYDIIGDITVTSARREIVAFSNSISDNSMRILMRKGTL-IDGMDDLKYNRIGIRIGTAGEDYYLREIGSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIY-CNLTLVGEDFDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKAP 246
26 -76.700d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  22  1......LKVGVV-GNPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYRQNSISAGITAVAEGELDLIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATPFRSVGDLKNKEVAVVRDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKE-NSPLQKTINVEMLNLLYSRVIAEFTERWLG.... 221
27 -76.200d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  18  8.KQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLVEAANRVEFLKSNKVDIIANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-ITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHP-DFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFG 236
28 -76.100d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  9..ESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIMSGISINLERQRQAYFSIPYLRDGKTPITLCEEARFQTLEQIDGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL..... 232
29 -73.100d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  19  9.KEQGFARIAIA-NEPPFTAVGADGKVSGAAPDVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAIAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPSYKDIADNPDAKIGAPGGGTEEKLALEAGPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAK. 242
30 -71.800d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  19  13.ADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVTVEELIAKLRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASADLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW...... 234
31 -69.800d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  16  7.KSKGQLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDKKIKLVAVNAKTRGPLLDNGSVDAVATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-YKSLADMKGANIGVAQAATTKKAIGEIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDD----KSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG..... 230
32 -62.100d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  45..DRLFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFDLKNGHWTGLVGDLLSGTANMVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHRFGTVRESSAEDYVRQSFPEMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYKSHGFMDVLHDKWYKVVP. 289
33 -47.500d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  45..................EGMNVKKCCKGFCIDILKKLSRTVKFTYDLVNNVWNGMIGEVVYQRAVMVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRRFGTVPNGSTERNIRNNYPYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLT.... 275
34 -41.400d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  14  2..IGRHLRLGSVEE-QPFMFFATEGCWSGMVNDMVVKLSEDLGFTYEYITNEWNGMIRDLLDDKTDMAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGTTLNQVLELLDQKWGVIGSRHPETLLKTHRDSRYSRLVDDLNHAIETLRGGL-FVFIDEGPVLAHNLISD---DVFSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWS..... 245
35 -39.000d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  54....................HTVPQCCYGFCIDLLIKLARTMNFTYEVHLVAWNGMMGELLSGQADMVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQK---DLVTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQE. 286
36 -36.400d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  2.....RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNFEPVRWDGIIRQLIDNNAQIICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKVSESNDTDNRMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN--ELTQIGESFGEKHYGIAVPLNAD-FRSNLSVGILRLSERGELFKLRNKWFNS... 255
37 -36.400d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  1..GGVVLRVVTVLE-EPFVMVSENKKYQGFSIDVLDALSNYLGFNYEIYVGTWNGLVGELVFKRADIISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIP-RDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHG-SPYRDVFSQRILELQQSGDMDILKHKWW..... 257
38 -35.800d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  1...NKTVVVTTILE-SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGWNGMVGELVYGKADIIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIARSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWW..... 253
39 -19.300d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  8  33...................................GLKAQFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVER-SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKHA................. 211
40 -11.700d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  11  3..ETANIKLG--VEAAPLIIAQEKGFFAKYGMTGVEVS----------KQANWASARDNVTIGSQGGMYVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAFPNVNQDFWIRYWFAAGGVDPDTDIDETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADKALLKGIMEAQQWIDDPKNRPEVVQ........ 258
41 -11.000d5b7ha1 c.94.1.0 (A:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}  ali model 3D-neighbors follow..  14  9DSMQGQLKLGCIPTIAPF-----------LLCDLVQEINQRFQLNLLLREDTTTNLLTALRHGELDV--LILALPVEIDGME-SRVVGQDPFKMVISRHQAGAIKYDDLPDESVFLLEKEHAVSACKLTDKEKINPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSNQLAEVVSELL...................... 216
42 -11.000d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  12  7......................TKGRIQKQVTKLLENADYDVE-DLQIIFGKPNDVITFLEHGIVDIFVGKDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRVTKKYFAQKQEDIEIIKLEGSVELGPVV--GLADAIVDIVETGNTLSAN----GLEVIEKISDISTRMIVNKSSFKFKKDKIIEMVERLED................. 204
43 -10.800d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13  6....................VPNKGALSEPATEILAEAGYRRR-NVEFFFLRPKDIAIYVGSGELDFITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLVRKDLATKGIEATVIRLDGAVEISVQL--GVADAIADVVGSGRTLSQH----DLVAFGEPLCDSEAVLIERAGGQDQTEARDQLVARVQG................. 205
44 -10.300d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  16  1..............FVPFVFAATDYTAFALLPPLMNRLQHSAGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGIQAHDWFADRYVVVARRDHPRLAGAPTLEGRHAVVTPWNEDDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAEAAG---LALYPAPFDIPPYVLRLQHVGRDAHAWMIGQLKGLD.................. 212
45 -9.980d4n4ua1 c.94.1.0 (A:24-326) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  15  22..................RVMEDIEKNTGGEVKFRLRLAGSLPIQ--------TDITQAVGNGTVRFADDGFYLGNVRIAGILRLPMLLRSQEDFDKASARKLESLADIKGQKLRVSSPEQAAFVQRAGGIPVTL----GGAEVPSALSAGTIDGALTASAGGGKLVNKKAFEALSPEMQAKMRESVARQAPGTTAQIAKEEGEVTDALRQKGLVSGYWEDWAREQGP 288
46 -9.860d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1ETMSGPLHIGLIPTVGPY-----------LLPHIIPMLHQTFKLEMYLHEAQTHQLLAQLDSGKLDA--VILALVKESEAFI-EVPLFDEPMLLAIYEDHPWANPMADLAGEKLLMLEDDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVV-YLPAIKPEPRRTIGLVYRPGSEQLAEAIRARMDG.................... 209
47 -9.660d2vd3a1 c.94.1.0 (A:-1-212) automated matches {Methanobacterium thermoautotrophicum [TaxId: 187420]}  ali model 3D-neighbors follow..  15  9....................VPSKGRISEPAIRLLENAGVGLK-QIEVMFSRAADIPEFVADGAADLITGYDLIVERGSDVEEDLKYGRASLVLAAPEDSTIRGPEDIPRGAVIATEFPGITENYLREHGIDAEVVELTGSTEIAPFI--GVADLITDLSSTGTTLRMN----HLRVIDTILESSVKLIANRESYATKSGIIEELRTGIRG................. 209
48 -9.270d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  11  1...TGRLNIAVLPTIAPYLL------------RVFPIWKKELGLEIHVSEMQTSRCLASLLSGEIDM--AIIASKAETEGLE-DDLLYYEEFLGYVSRCEPLFERTTEVNPHRWLLDEGHCFRDQLVRGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKEL-VRPFGMPRPVREVRLAVRQDYEQLIGLLRSAVPSDMHKLQTGQ........... 216
49 -9.130d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  2NDTSGVLTIATTHTQARYSLPE-----------IKAFRELFPEVRLELIQGTPQEIATLLQNGEADI--GIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQTLESIAKWPLITYRQGITDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQS----SGEQEEENLIRLDRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQ....... 216
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.