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Query: d3huta1 c.93.1.0 (A:40-384) automated matches {Rhodospirillum rubrum [TaxId: 269796]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALPVYGSSALYSPKFIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAGPEVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVILast
1 -106.000d3huta1 c.93.1.0 (A:40-384) automated matches {Rhodospirillum rubrum [TaxId: 269796]}  ali model 3D-neighbors  100  1ALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALPVYGSSALYSPKFIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAGPEVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVI 345
2 -92.500d4nqra_ c.93.1.0 (A:) automated matches {Anabaena variabilis [TaxId: 240292]}  ali model 3D-neighbors follow..  18  2TIPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIGDYVARVSAPVSVVAPNSVKAALNPNIKKVAVFFANDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKRTELNKQLLT-GKYNTPLGEISFTPIGEVVQKDFYVAQIKMEKDG.. 355
3 -92.000d4gnra_ c.93.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  2TIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQDYLFIGTFQDSFQGKIISNYVSELNAKKVVLYTDNSDYAKGIAKSFRESY---KGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATEKASNIYFISGFSTTEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKGAK---NSGEIKDNLAKTKDFEGVTGQTSFDADHN-TVKTAYMMTMNNGKVEAA 343
4 -91.500d4q6ba_ c.93.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}  ali model 3D-neighbors follow..  23  2EIFIGVAWPFAS----LDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTDHGIHVFRNIPSDQEIARQLAIYLAEQGHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGMDGIFIAKTATGGGTFLVDAKSVGIEVPLIAGNSWDATEDIENIGMTAEGLLVGSFFNPQRPDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSD-LTHPATLAQGLRDLGPWEGVMGMHRFDGRGDDIGDLVVLKKMKDGRFEYL 346
5 -91.300d3td9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  25  1VVKIAVILPMTGGISAFGRMVWEGIQIAHEEK---PTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKLGAKRVVVFTDEQDYSVGLSNFFINKFTELGGQVK-RVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGYILAGDGADAPELIEIGGEAVEGLLFTTHYHPKASNPVAKKFVEVYKEKYGKEPAALNALGYDAYMVLLDAIERAG-SFDREKIAEEIRKTRNFNGASGIINIDENGD-AIKSVVVNIVKNGSVDFE 342
6 -90.400d3ipca1 c.93.1.0 (A:2-348) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  24  2.VVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGWNTFRTCGRDDQQGGIAGKYLADFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSNELASIAGDAVEGTLNTFGPDPT-LRPENKELVEKFKAA-GFNPEAYTLYSYAAMQAIAGAAKAAG-SVEPEKVAEALKKG-SFPTALGEISFDEKGDPKLPGYVMYEWPDGKFTYI 345
7 -90.300d1z15a_ c.93.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  18  2DIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGQLILRTTGLDSDQGPTAAKYILEVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSD---DPAEIAKYLKAN-SVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATD 342
8 -80.400d3snra_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316057]}  ali model 3D-neighbors follow..  22  4EITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPI-TPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGLIYQTHGAASMDFIRIAGKSAEGVLMASGPDTALTKKPGMALVKVYEEKYGPSSSQFAGHSYDAFKVLERVVPVAGTQEFREALREAFLTEKDIAASQGVYNFTETDRLDDRSRILLTVKNGKYVIV 358
9 -79.300d3sg0a_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  22  3EIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDEWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGAIYQTHGVATEEFIKLGGKDVEGAIFAGEAFSGAEDKVKARFVDAYKAANGGAPTIFGVHLWDSMTLVENAIPAALKAAFRAAIRDQIEKSKDLALNNGLSNMTPDNHNDERSAFLIEIRDGAFRL. 360
10 -69.800d1peaa_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20  3...IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGF--EYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGRRPPIASLTTSEAEVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENITAWAEAAYWQTLLLGRAAQAAG-NWRVEDVQRHLYDID-IDAPQGPVRVERQNNHSRLSSRIAEIARGVFQVR 347
11 -63.400d3n0xa_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  16  1DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGENRYIFRTGRNSSQDAISNAVAIGKQG-VTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPALAAYKRLPG----MEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAK-STDTEKLIAAMEGME-FDTPKGKMVFRKEDHQALQSMYHFKVKVDP.... 345
12 -48.200d2h4aa1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  16  2..QIGLLLPLSGDGQILGTTIQSGFNDAKG---------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNLDVLADPAQIQGMDVLALNATPNSRAIPQLCYYGLSPED--EAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNS--NTTALYAVASPTELAEMKGYLTNIVPNLAIYASSRASASATNTDFIAQMNGVQFSDPFFKDTNSPQYQKLAKSTGGEYQLMR--LYAMGADAWLLINQFNELR------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317
13 -34.300d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  7KIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTPPGTRFQVAYEDSDCGNRALFSLVDRVARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMDYAFFNIELFNSSSY-FEAKQAYSSLQTVTLLRT--VKPEFEKFSMEVKSSVEKQGNMFVEGFHDAILLYVLALHEVYSKKDGGKIIQQTWNRT-FEGIAGQVSIDANGDRYGD-IAMTDVEAGTQEVI 387
14 -31.600d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  2DLTVAVVLPLTNTSYPWSARVGPAVELALARVKARPDLLGWTVRMVLGSSECSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLDYVFFHLDVFGGDGQDRSARQAFQAAKIIT--YKEPDNPEYLEFLKQLKLLADGLKNIIPASFHDGLLLYVQAVTETGTVTDGENITQRMWN-RSFQGVTGYLKIDRNGDRDTDSLWDMDPETGAFRVV 391
15 -30.700d5x2mb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  15  18.IKLGGLFPICDSLNKDGLGRALVMKYAVEEINANSQLLGVKLGYKIYNTCRHSAVIVRPALSFLTETDMVAVIGPQSSEMVTVIGKLLGFFLMPQISFGATSDKFSDSLVYFFRTVPSDIRQVDAMVQLIKKFNWNWVAVVGSEEEYGQQGVQQFSKKAEDMGVCVAYQGLIPIYDDPIQTIINNIQTTEVKVVVVFSLVSPAVSFFEEVIKKNLTGVWIASSSWAISDKVYSL-DSIGTVIGFI--DETETLELLSPFTEVLFKKKEESVQRTAFSVYAAVYTVAHALHKL-TRLYPWKLLEVLKEF-SVNISNTSLKFDQNGNPNIGSVIQRIWENQSLSSV 444
16 -29.800d3h6ga_ c.93.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  3VLRFGGI--FEYVESGPMGAEELAFRFAVNTINRNRTLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDST-GLIRLQELIKAPSRYNLRLKIRQ-LPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEIFTTLDLFALDVEPYRYSGVN---MTGFRILNTENTQVSSIIEKWSMERLQAMTTDAALMYDAVHVVSVAVQQFPQMTVSSRFMSLIKEAH-WEGLTGRITFNKNGLRTDFDLDVISLKEEGLEKI 370
17 -28.500d5x2ma_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  13  10.YLIGGLFNIHYVAAANNYRRFQMMRFSVEEINNSSSLLNVSLGYQMFDHCSDIHSFPGIFKLLSVNDLAIGVVGPFTSTHALSIAPIFMTNLFPMVSYGCSGSVFSKENLYFLRTVHSNKDVINAIVGIILNFNWRWVAFLYSDDDFGKDGLEQFKNKIEDSEICLAFYKAI-NVNTDYLQVFKQIEEQNIKVIVVFAPKVYAEAVVESAVQLNVTNKVIADDGWSLNKKLPSMNGIQNIGTVLGVAQPVVTIPGFTDFIYSAIKSLLNADPSFSFPVYAAVYAIAHALHNKNITVHPHMILEELKKS-NFTLLNQTVQFDENGDPKFGSLSVVFWNSGSY... 424
18 -27.700d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  10.VIIGALFSVHHQPPQYGIQRVEAMFHTLDKINADPVLLNITLGSEIRDSCWHSSVALEQSIEFIRKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKINAGEKSFDRLLRKLRLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFIGSDGWADRDVIEGYEVEANGGITIKLQSPEDTNTRNPWFPEFWQHRFQYVQDSKMGFVINAIYAMAHGLQNM-KPIDGRKLLDFLIKSS-FVGVSGEVWFDEKGDAPGR-MNLQYTEANRYDYV 460
19 -26.500d3hsya_ c.93.1.1 (A:) Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  2SIQIGGLFPRGADQE------YSAFRVGMVQFSTS------EFRLTPHIDNLEVANSFAVTNAFCSSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPF------VIQMRPDLKGALLSLIEYYQWDKFAYLYDSDR-GLSTLQAVLDSAAEKKWQVTAINVGNKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKIIANLGFTDGDLLKIQFGGAN---VSGFQIVDYDDSLVSKFIERWSTLEEKEIKYTSALTYDAVQVMTEAFRNLRKQGQGVEIERALKQVQ-VEGLSGNIKFDQNGKRINYTINIMELKTNGPRKI 362
20 -26.300d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  3IIHIGAIFDESAKKD------DEVFRTAVGDLNQNEELQTEKITFSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGDDYTLSVRPPVYLHDVILRVVTEYAWQKFIIFYD-SEYDIRGIQEFLDKVSQQGMDVALQKVENNINKMITTLFDTMRRDTLRRAILVMNPATAKSFITEVVETNLVAFIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQN--ISQRCFRGNHRISSNMEISNLYIYDTVLLLANAFHKKLEDQGGRSMLETIKKGG-VSGLTGELEFGENGGNPNVHFEILGTNYGE.... 384
21 -11.300d4zjpa1 c.93.1.1 (A:24-292) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  11  1QETIALT--VSTLDNPFFVSLKDGAQKKATELG---------YKLVVLDSQNDPSKELSNVEDLTVRGAKVLLINPTDSAAVSNAVAIANRNKIPVITLDRG----AAKGEVVSHIASDNVAGGKMAGDFIAQKDGAKVIQLEAGTSAARERGEGFKQAIEAHKFDVLASQPADFDRTKGLNVTENLLASKGSVQAIFAQNDEMALALRAISAAGKKVLVVGFDGTEDGVKAVKSGK............................................................................................................ 227
22 -11.100d3brsa_ c.93.1.0 (A:) automated matches {Clostridium phytofermentans [TaxId: 357809]}  ali model 3D-neighbors follow..  1QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSG----MKQDIADITVATDNIQAGIRIGAVTKNLKSGKIGVISKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATAARAIKDMSLKVKLVCIDS........................................................................................................................ 221
23 -10.700d4ry9a_ c.93.1.0 (A:) automated matches {Verminephrobacter eiseniae [TaxId: 391735]}  ali model 3D-neighbors follow..  12  2AFKIGVS--MKTLSAPYFAAQMEAAKARGKELG---------YEVLATDAQGKLQKQISDVEDLVTRGVKLLIINPADSEGLVNAVNNASANGVKVVV---IDSTLNPRANFVTQVQSSNSINGALVGHWVIEEKSLKIALLS-RLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDEGGLKAMEDLLVANKDINMVLGENDSMVLARRAIESAGRILLVAAADA........................................................................................................................ 228
24 -10.100d4ylea_ c.93.1.0 (A:) automated matches {Burkholderia multivorans [TaxId: 395019]}  ali model 3D-neighbors follow..  11  3KPKVALV--MKSLANEFFLTMENGAKEYQKHNASQ------DLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNNRLDPDVLKSKNLNVPFVGPDNRKGARKVGDYLAKKAGDQVGIVESTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLCGNDNMAIAVSAVRAAGKKVYVVGYDN........................................................................................................................ 229
25 -9.880d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1AAEYAVV--LKTLSNPFWVDMKKGIEDEAKTL-------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNEKIDMDNLKKAGGNVEAFVTTDNVAGAKGASFIIDKEGGEVAIIEAGNASGEARRNGATEAFKKAQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMVAQAVANAGKKVLVVGTDGIPEARKMVEAGQ............................................................................................................ 240
26 -9.830d4joqa1 c.93.1.0 (A:25-319) automated matches {Rhodobacter sphaeroides [TaxId: 349102]}  ali model 3D-neighbors follow..  12  5VGTIGIAIPSATH--GFMGGLNFHAQDTIKRLQEV------PQLDFVLATAGNAGKMVNDIEDMVATRNISALVLPFESEPLTSPVQAVKEAGIWVTV---VDRGLSVEGIEDLYVAGDNPGFGRVAGEYFAQHSGKKIVVLRIPTTLDNERVEAFTAAIEGSGIEVLDMQHGNWNRDDAFNVMQDFLSKYPQIDAVWAADDDMAIAMEAIAQAGREMWVMGGAGMKE..................................................................................................................... 229
27 -9.800d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}  ali model 3D-neighbors follow..  40PIKISVVYP-GQQVSDYWVRNIASFEKRLYKLNIN------QLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAESRELATEFGKFKHTYYSVLYFSEGYSDVRGDTFIHQVNRDNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVM..................................................................................................... 283
28 -9.630d2fn9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  10  2..KMAIV--ISTLNNPWFVVLAETAKQRAEQLG---------YEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFC---VDRGINARGLAVAQIYSDNYYGGVLAGEYFVKFKEIPYAELLLSAQPTWDRSNGFHSVVDQYEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALAMKACEAAGRDIYIFGFDGAEDVINAIKEGKQIVATIMQFP.................................................................................................. 245
29 -9.410d4irxa1 c.93.1.0 (A:39-325) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  13  1..EVVVS--FNDLSQPFFVAMRRELEDEAAKLG---------VKVQVLDAQNNSSKQISDLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVIS---VDRNIAGGKTAVPHVGADNVAGGRAMADWVVKTYPAGARVVVITNDPGSSSSIERVKGVHDGAFKIVTEQTANSKRDQALTVTQNILTSMRDTVILCLNDDMAMGALEAVRAAGLKVKVIGFDAIPEALARIKAGE............................................................................................................ 233
30 -9.240d2h3ha1 c.93.1.0 (A:1-305) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  12  2.LTIGVIGKSVHP---YWSQVEQGVKAAGKALGVDTKFFV--------PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPD----SGRYVYIGTDNYQAGYTAGLIMKELGKGKVVIGTLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPQALVVKNAGKKVKIVCFDT........................................................................................................................ 217
31 -9.150d3gbva_ c.93.1.0 (A:) automated matches {Bacteroides fragilis [TaxId: 272559]}  ali model 3D-neighbors follow..  2KYTFACLLP-KHLEGEYWTDVQKGIREAVTTYSDFN------ISANITHDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIY---IDSQIKDAPPLAF-FGQNSHQSGYFAARMLMLLNDREIVIFRKIHEGVIGSNQQFRQYMQEHACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSKVYIIGEYLQQRRKSDFSLIGYDLLERNVTCLKEGTVSFLIAQQPE----------------------------LQGFNSIKTLCDHLIFRKEVACTNYMPIDLLTKENID................................ 286
32 -9.130d3ksma1 c.93.1.0 (A:39-313) automated matches {Hahella chejuensis [TaxId: 349521]}  ali model 3D-neighbors follow..  13  2..KLLLV--LKGDSNAYWRQVYLGAQKAADEA-------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALLAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRAGNASTDQREQGFLDVLRKHKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIALVAIRQSGMQFGFIGFDQ........................................................................................................................ 222

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.