current user: public
If you have questions about the server, please let us know.

Query: d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .
# Score Template Links and tools%idFirst TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDGADLSGIVAAQTATIQAGYIAESGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYLast
1 -111.000d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors  100  1TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDGADLSGIVAAQTATIQAGYIAESGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVY 218
2 -95.300d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  25  7TLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGAADLKGKVGLENGTTHQRYLQDQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT...... 228
3 -95.200d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  25  13EIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGAKDLQGKVGVQVGTTYMEAAQKGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVR.. 234
4 -94.400d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  32  5TVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPESLKGKVGVLQGSTQEAYANDKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVY.. 236
5 -92.000d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  24  2KFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGEPLTQYRVAVQTGTYQEAYLQSSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN.... 224
6 -91.900d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  24  15TVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSNADIKGVTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISV. 239
7 -91.700d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  31  3SITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPKIFEGVFGVQAGTSHEAFMKQPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDAS.. 253
8 -91.400d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  26  14SITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSGKDMTGKLGAQAGSSGYADFEAANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVNDYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVA.. 244
9 -91.300d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  21  7VYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDKDLKGKLGAKNGTASFDYLNAYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQK--FATPIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESDA... 230
10 -90.100d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  25  3ELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSTLVTKFGVSAEYAAKRKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTK... 228
11 -89.400d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  21  3NLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKDDLHGKIGVRKGTPYARQVLSENNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPKKYKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF....... 228
12 -88.700d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  28  2ELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTDDLNGKIAAKTGTATIDWIKAKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSE.... 221
13 -87.700d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  26  10YLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDEDLVGKVAVQIGTTGDIEVSKDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPD--LVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS...... 226
14 -86.900d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  25  6TIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPEDLRGRVALHRDGIMHEYLAERGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVL.... 226
15 -86.700d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  19  6TLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKNELNKYIGYPRGMAYSDLIKNSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESR-YVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM....... 228
16 -86.400d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  22  11KIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLKDLKGKAAGAATTVYMEVARKAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVS. 240
17 -86.300d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  22  9KLVVALNPDFAPFEYVDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLNDLAQKVGAQKGSIQETMAKDQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASIE.. 237
18 -85.300d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  25  11TISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEADAAGLKGKLGVVQGTLQEIYAEKNGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAV-NIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPM.. 234
19 -85.000d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  23  3TITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNKDLAGKVITSATSNGALVLKKINEEAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDV-LSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYS.. 232
20 -84.900d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  29  6KVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPLDLKGKIGVQNATTGQEAAEKKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPK.. 229
21 -83.400d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  24  2.LLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIESSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESDDLPGKVATTAGSTAATYLREHHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD...... 219
22 -82.000d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  18  2TVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSDNDIAGHTQVVQGNTTVPMLQKFNKNNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGDNLKVIDLPSDQKPYVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYL.. 231
23 -81.000d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  19  7TLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADVPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLDDLKNRIGIRIGTAGEDYYLRESRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGED-FDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKAC.. 245
24 -79.700d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  20  1.LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVRNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATGDLKNKVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKE-NSPLQKTINVEMLNLLYSRVIAEFTERWLG...... 221
25 -77.700d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  12VLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTTAIVNPGGTNEKFARAKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL....... 232
26 -77.500d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  22  12ELKVGTTGDWDPMAMKDPTNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYD-ISTSVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKKYSTTIATTLGTSQEEKAKEPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQ-LAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL... 236
27 -76.200d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  24  12EIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKINGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQDDLNASVLAVKGSTSAANIRQHDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPE--YELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETE.. 237
28 -76.000d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  19  13FARIAIA-NEPPFTAVGADGKVSGAAPDVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSKIGAPGGGTEEKLALEAGDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPCDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAA. 244
29 -74.200d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  12VVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNEDLKDKLLLNKGTTADAYFTQNNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGI-KELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFG.. 236
30 -68.200d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  21  11QLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKADMKGAIGVAQAATTKKAIGEADVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE----ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG....... 230
31 -60.800d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  48FSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFDLKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTESQGFRFGTVRESSAEDYVRQSYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYKSHGFMDVLHDKWYKVV.... 288
32 -51.100d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  20  17VVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVTVEELIAKLRSGEAD-MAGALFVNSARESFLSFSRPYVRNGMVIVTRQDDADHLDGRVALVRNSAAIPLLQRRQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW........ 234
33 -47.500d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  3.LSIVT----APFVIVEDKKCCKGFCIDILKKLSRTVKFTYDLVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGL-RFGTVPNGSTERNIRNNYPYMFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTSGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLT...... 275
34 -38.200d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  16  5HLRLGSVEE-QPFMFFATEGCWSGMVNDMVVKLSEDLGFTYEYTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGNQVLELLDQDKYKWGVIGSRHPETLLKTHRVELKDLNHAIETLRGGLFVFIDEGPVLAHNLISDCD--VFSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWSS...... 246
35 -36.700d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  55................TVPQCCYGFCIDLLIKLARTMNFTYEVHLVAWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRISDKFIYATVKQSSVDIYFRRQVELSTMYRSAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD--LVTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQ.... 285
36 -35.700d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  2RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNFEPVRWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKVQFGTIRGGATSVYFSEKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGES-FGEKHYGIAVPLN-ADFRSNLSVGILRLSERGELFKLRNKWFNS..... 255
37 -35.500d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  4VLRVVT----EPFNVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVATWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGRMINRSNGSENNVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHG-SPYRDVFSQRILELQQSGDMDILKHKWWPKN.... 260
38 -33.900d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  20  3TVVVTT----SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTGSTKEFFRRSKIAVFDKMRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWW....... 253
39 -16.000d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  10  37..................................QFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICR--KGESGNVKVGLDSRSADQKIMTDVFFGDSDVESYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDKHA................... 211
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.