current user: public

If you have questions about the server, please let us know.

Query: d3ifva2 d.131.1.2 (A:113-243) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst PDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPRLast
1 -73.400d3ifva2 d.131.1.2 (A:113-243) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors  100  1PDSIRQEPDIPDLDLAANIVLEGTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPR 131
2 -59.100d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  32  1..........PELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHM--TETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPR 119
3 -57.600d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  17  1.............EFDIKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGG-GKVTYLLAPK 117
4 -57.500d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  16  1.............EFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQE-GYGDFYIAPR 117
5 -57.300d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  1........GIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADM-GHLKYYLAPK 128
6 -56.900d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  32  1..........PELPFTAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDE-GRLTFLLAPR 121
7 -56.800d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  1........KIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS--GFLQFFLAPK 127
8 -54.100d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  19  1........EIPELQSDAIITLSSAEFLKITKDFSALGDDITIGCTKNEVTLTTKGAMCETCMTLSALENGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKG--EACVLKFYLAPK 126
9 -17.600d3ifva1 d.131.1.2 (A:2-112) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  18  2.................KAIVSAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGVIGVNLSRLEEVAGMAGAGDLIHLTLDEET--KLNIRIDGLSYTLALI.... 110
10 -17.500d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  3.................DVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFG............... 102
11 -17.400d3p91a1 d.131.1.0 (A:1-127) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  12  10.....................EAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLIETDADEFQCLKPITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLN.. 118
12 -17.400d3aixa1 d.131.1.0 (A:1-126) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  12  4..................KVIDADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILIPAGYEEYNVEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKVTLD............... 102
13 -16.600d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  8.....................GAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSISKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQ............... 103
14 -16.400d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  14  7.....................DVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSPEVVKLTLS............... 102
15 -15.600d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  8.....................QGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNA-LALVFEAPNQEKVSDYEMK.. 117
16 -15.500d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  8.....................EASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTP-IILLFEDTKKDRIAEYSLK.. 117
17 -12.800d5w7za3 d.131.1.0 (A:249-379) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  12  4.........IPE-SSSSKLVINRKMFADSIERIAIITVEVKLSLSRETLEISAVGARGNAKEVINSSESFYEYNSDESLAIGFNPQYLEDVLKAVK-SDVVELYFSDVAPVLIK---FPENPKDIFVVMP. 128
18 -11.600d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  7.............NPDKHLEAGCDLLKQAFARAAILSNEVRLYVSENQLKITANNEQEEAEEILDVTYS------GAEMEIGFNVSYVLDVLNALK-CENVRMMLTDSSSVQIE---DAASQSAAYVVMP. 119
19 -11.500d5wcea3 d.131.1.0 (A:251-372) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  14  1.......MRVIPRDNAKILTLDNDLFAKAVDRVATISAEVKLAVEPGRITLTVRNEAGQAVEEVEVDYD------GEPFEIGFNARYLLDVCGQIA-GPQAEFRFADPASPTL----DPVDPGVKYVLMP. 119
20 -11.300d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  7.............TFKTKVVVSRKELRESLKRVMVIASKVKFEIEENVMRLVSKSDYGEVVDEVEVQKE------GEDLVIAFNPKFIEDVLKHIE-TEEIEMNFVDSSPCQIN---PLDISGYLYIVMP. 119

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 1 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.