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Query: d3ipca1 c.93.1.0 (A:2-348) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSNELASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQLast
1 -107.000d3ipca1 c.93.1.0 (A:2-348) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors  100  1DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSNELASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQ 347
2 -97.300d1z15a_ c.93.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  39  2DIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKQDPSGAFVWTTYAALQSLQAGLNQSD--DPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDW---HANGTATDAK 344
3 -90.400d3huta1 c.93.1.0 (A:40-384) automated matches {Rhodospirillum rubrum [TaxId: 269796]}  ali model 3D-neighbors follow..  24  2.LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIG-DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALPVYGSSALYSPKFIDLGGPAVEGVRLATAFVLGSDPVVVEFVSAYETLGAIPTLFAAHGYDAVGIMLAAVGRAGEVTRESLRDALAATRYAGVTGITRFDPETRETTKILTRLVV---REGDFRVI.. 345
4 -87.400d4nqra_ c.93.1.0 (A:) automated matches {Anabaena variabilis [TaxId: 240292]}  ali model 3D-neighbors follow..  21  3.IPIGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIG-DYVARVSAPVSVVAPNSVKAALQNPNIKKVAVFFANDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGYQGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPETGEINKAFRQAYVDQKKEPPQFSAQAFAAVQVYVESLKALDTKNKTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQIKMEKQGKFTFLK. 364
5 -87.100d3td9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  30  2.VKIAVILPMTGGISAFGRMVWEGIQIAHEEK---PTVLGEEVELVLLDTRSEKTEAANAAARAIDEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQGR-KFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDEQDYSVGLSNFFINKFTELGGQVK-RVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGYILAGDGADAPELIEIGGEAVEGLLFTTHYHPKSNPVAKKFVEVYKEKGKEPAALNALGYDAYMVLLDAIERAGSFDREKIAEEIRKTNFNGASGIINIDENGDAIKSVVVN----IVKNGSVDFEAV 344
6 -86.000d4gnra_ c.93.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  28  3.IKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQ-DYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDASDYAKGIAKSFRESY---KGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKPIVGGDGFNGEEFVQQATEKASNIYFISGFSTEVSAKAKAFLDAYRAKNEEPSTFAALAYDSVHLVANAAKGAK--NSGEIKDNLAKTDFEGVTGQTSFDADHNTVKTAYMM----TMNNGKVEAAEV 345
7 -85.500d4q6ba_ c.93.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}  ali model 3D-neighbors follow..  26  2EIFIGVAWPFAS----LDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNGIQAVIGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTDHGYIHVFRNIPSDQEIARQLAIYLAEQ-GHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGMDGIFIAKTATGGGTFLVDAKSVGIEVPLIAGNSWDATEDIENIGMTAEGLLVGSFFNPQPDSRTQDFVEAFRREGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLPWEGVMGMHRFDGRGDDIGDLVVLKKM---KDGRFEYL.. 346
8 -71.400d3sg0a_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  21  3EIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVADERRKWVYKVVPNDDIMAEAIGKYIAK-TGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGAIYQTHGVATEEFIKLGGKDVEGAIFAGEADSPFRKVKARFVDAYKAANAAPTIFGVHLWDSMTLVENAIPAALKAFRAAIRDQIEKSDLALNNGLSNMNHNGYDERSAFLI----EIRDGAFRL... 360
9 -71.100d3snra_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316057]}  ali model 3D-neighbors follow..  21  4EITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPI--TPERAKWSVVMPQPIPIMGKVLYEHMKKN-NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGLIYQTHGAASMDFIRIAGKSAEGVLMASGPTALTKKPGMALVKVYEEKYGPRSQFAGHSYDAFKVLERVVPVALKKFREALREAFLTEDIAASQGVYNFTETDRLDDRSRILLTV---KNGKYVIVK. 359
10 -65.800d1peaa_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  3...IGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFINRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYS---PNIVYGGPAPNQNSAPLAAYLIRHYG-ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGRRPPIASLTTSEAEVAKMESDVAEGQVVVAPYFSSDTPASRAFVQACHGFFPEITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEID--ARGVFQVRWQ 349
11 -62.300d3n0xa_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  20  1DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMLDGRKIVVITKDDQSKPDLSKAALAEAYDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITEKWNRYIFRTGRNSSQDAISNAVAIGK--QGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPALAAYKRLPGMEGATYYY---YDIPKNPINEWLVTEHQKRFNAPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPAVAWAVLE. 353
12 -42.300d2h4aa1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  13  2..QIGLLLPLSGDGQILGTTIQSGFNDAKG---------NSTIPVQVFDTSMNSVQD--IIAQAKQAGIKTLVGPLLKQNLDVLADPAQIQGMDVLALNATPNSRAIPQL-CYYGLSPED--EAESAANKMWND-GVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNS--NTTALYAVASPTELAEMKGYLTNIVPNLAIYASSRASASATNTDFIAQMNGVQFSDIPKDTNSPQYQKLAKSTGGEY-QLMRLYAMGADAWLLINQFNELR----------QVPGYRLSGLTGILSADTNCNVERD----MTWYQYQDGAIVPV.. 317
13 -35.200d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  7KIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTPPGTRFQVAYEDSDCGNRALFSLVDRVAGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDYSHLTRVAPAYAKMGEMMLA-LFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQNMFVEGFHDAILLYVLALHEVSKKDGGKIIQQTWNRTFEGIAGQVSIDANGD-RYGDFSVIAMTDVEAGTQEVI.. 387
14 -32.200d5x2mb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  18  17DIKLGGLFPICDSLNKDGLGRALVMKYAVEEINANSQLLGVKLGYKIYNTCRHSAVIVRPALSFLTEDMVAVIGPQSSEMVTVIGKLLGFFLMPQISFGATSDKFSDSLYPSFFRTVPSDIRQVDAMVQ-LIKKFNWNWVAVVGSEEEYGQQGVQQFSKKAEDMGVCVAYQGLIPIYDDPIQTIINNIQTTEVKVVVVFSLVSPAVSFFEEVIKKNLTGVWIASSSWASDKVYSLPNIDSIGTVIGFIDETETLELLSPFTEVLFKKIHEASRTAFSVYAAVYTVAHALHKLTRLYPWKLLEVLKEFSVNISNTSLKFDQNGNPN-IGYSVIQRIWENQS....... 440
15 -31.000d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  2DLTVAVVLPLTNTSYPWSARVGPAVELALARVKARPDLLGWTVRMVLGSSENDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDYALTTRTGPSHVKLGDFVTA-LHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVREVNHQEFVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGLAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKNIIPASFHDGLLLYVQAVTETTVTDGENITQRMWNRSFQGVTGYLKIDRNGD-RDTDFSLWDMDP-ETGAFRVV.. 391
16 -30.000d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  9DVIIGALFSVHHQPPQYGIQRVEAMFHTLDKINADPVLLNITLGSEIRDSCWHSSVALEQSIEFIRKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTYKYFLRVVPSDTLQARAMLD-IVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKINAGEKSFDRLLRKLRLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWMGFVINAIYAMAHGLQNMKPIDGRKLLDFLIKSSFVGVSGEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVH. 461
17 -29.900d5x2ma_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  18  9DYLIGGLFNIHYVAAANNYRRFQMMRFSVEEINNSSSLLNVSLGYQMFDHCSDIHSFPGIFKLLSVNDAIGVVGPFTSTHALSIAPIFMTNLFPMVSYGCSGSVFSKENYPSFLRTVHSNKDVINAIVG-IILNFNWRWVAFLYSDDDFGKDGLEQFKNKIEDSEICLAFYKAINV-NTDYLQVFKQIEEQNIKVIVVFAPKVYAEAVVESAVQLNVTNKVIADDGWSNKKLPSMNGIQNIGTVLGVAQPVVTIPGFTDFIYSAISQTDGGDTESFPVYAAVYAIAHALHNTITVHPHMILEELKKSNFTLLNQTVQFDENGDPKFGSLSVVFWNSSGNGSY..... 424
18 -27.200d3h6ga_ c.93.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  4.LRFGGI--FEYVESGPMGAEELAFRFAVNTINRNRTLLNTTLTYDTQKNLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWK-HQVSDNKDSFYVSLYPDFSSLSRAILD-LVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRY--NLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEIFTTLDLFALDVEPYRYSGVN--MTGFRILNTENTQVSSIIEKWSMERLQMTTDAALMYDAVHVVSVAVQQFPQMTVSRFMSLIKEAHWEGLTGRITFNKNGLRTDFDLDVISLKE........... 364
19 -25.100d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  4.IHIGAIFDESAKKD------DEVFRTAVGDLNQNEEILTEKITFSVTFDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGNDDYTLSVRPPVYLHDVILR-VVTEYAWQKFIIFYD-SEYDIRGIQEFLDKVSQQGMDVALQKVENNINKMITTLFDTMRRDTLRRAILVMNPATAKSFITEVVETNLVAFIIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQNISQRCFRGNHRISSNMEISNLYIYDTVLLLANAFHKKLEDRKRSMLETIKKGGVSGLTGELEFGENGGNPNVHFEILGTNYGEE........ 385
20 -25.000d3hsya_ c.93.1.1 (A:) Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  2SIQIGGLFPRGADQE------YSAFRVGMVQFSTSEFRLTPHIDNLEVANS----AVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPF-------VIQMRPDLKGALLS-LIEYYQWDKFAYLYDSDRGLSTL-QAVLDSAAEKKWQVTAINVGDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKIIANLGFTDGDLLKIQFGGAN--VSGFQIVDYDDSLVSKFIERWSTLEEKEKYTSALTYDAVQVMTEAFRNLRKQRIEEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKT........... 356
21 -12.100d3brsa_ c.93.1.0 (A:) automated matches {Clostridium phytofermentans [TaxId: 357809]}  ali model 3D-neighbors follow..  14  1QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY-------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILAAADYEKTYDAAKEIKDAGIKLIV--------SGMKQDIADITVATDNIQGIRIGAVTKNLVRKSKIGVISKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATAARAIKDMSLKVKLVCIDS......................................................................................................................... 221
22 -11.900d4zjpa1 c.93.1.1 (A:24-292) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  18  1QETIALT--VSTLDNPFFVSLKDGAQKKATELG---------YKLVVLDSQNDPSKELSNVEDLTVRGAKVLINPTDSAAVSNAVAIANRNKIPVITLDRG------AKGEVVSHIASDNVAGGKMAGDFIAQKLGDGKVIQLEAGTSAARERGEGFKQAIEAHKFDVLASQPADFDRTKGLNVTENLLASKGSVQAIFAQNDEMALALRAISAAGKKVLVVGFDGTEDGVKAVKSGK............................................................................................................. 227
23 -11.700d4ylea_ c.93.1.0 (A:) automated matches {Burkholderia multivorans [TaxId: 395019]}  ali model 3D-neighbors follow..  16  3KPKVALV--MKSLANEFFLTMENGAKEYQKHNASQ------DLITNGIKDETDTANQIRIVEQMIVSKVDAILAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKNLNVPFVGPDNRKARKVGDYLAKKLKAGQVGIVESTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLCGNDNMAIAVSAVRAAGKKVYVVGYDNINA...................................................................................................................... 232
24 -11.500d4ry9a_ c.93.1.0 (A:) automated matches {Verminephrobacter eiseniae [TaxId: 391735]}  ali model 3D-neighbors follow..  15  2AFKIGVS--MKTLSAPYFAAQMEAAKARGKELG---------YEVLATDAQGKLQKQISDVEDLVTRGVKLLINPADSEGLVNAVNNASANGVKVVVIDST----LNPRANFVTQVQSSNSINGALVGHWVIEEVGNKKIALLS-RLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDEGGLKAMEDLLVANKDINMVLGENDSMVLARRAIESAGRILLVAAADA......................................................................................................................... 228
25 -11.100d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  3..EYAVV--LKTLSNPFWVDMKKGIEDEAKTL-------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIFAPLSSVNLVMPVARAWKKGIYLVNEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEEVAIIE-GNASGEARRNGATEAFKKAQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMVAQAVANAGKKVLVVGTDGIPEARKMVEAGQ............................................................................................................. 240
26 -10.800d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}  ali model 3D-neighbors follow..  12  40PIKISVVYP-GQQVSDYWVRNIASFEKRLYKLNIN------QLNQVFTRPNADIKQQSLSLMEALKSKSDYLITLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHYYSVLYFSEGYSDVRGDTFIHQVNRDNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVM...................................................................................................... 283
27 -10.600d3ma0a1 c.93.1.0 (A:1-307) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  12  2EVKIGMA--IDDLRLERWQKDRDIFVKKAESLG---------AKVFVQSANGNEETQMSQIENMINRGVVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRM------NDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPE-LKIMENALTANNNKIVVASNDATAGGAIQALSAQGLKVAISGQDA------LAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGF...................................... 301
28 -10.400d2h3ha1 c.93.1.0 (A:1-305) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  15  2.LTIGVIGKSVHP---YWSQVEQGVKAAGKALGVDTKFFV--------PQKEDINAQLQMLESFIAEGVNGIIAPSDPTAVIPTIKKALEMGIPVVTLDTDSP-----DSGRYVYIGTDNYQAGYTAGLIMKELLGGKKVVIGT-TAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPQALVVKNAGKKVKIVCFDT---------------------------TPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIGVQNTLMMLPKVKVDGKVDYVI.................................. 277
29 -10.300d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  1NLKLGFL--VKQPEEPWFQTEWKFADKAGKDLGFE----------VIKIAVPDGEKTLNAIDSLAASGAKGFICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRSAVMAITANELDTARTTGSMDALKAAGKQIYQVPTKSNDIPGAFDAANSMLVQHPEVLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDV----------------------HGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF................................... 293
30 -10.200d2fvya_ c.93.1.1 (A:) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  1DTRIGVT--IYKYDDNFMSVVRKAIEQDAKAAPD--------VQLLMNDSQNDQSKQNDQIDVLLAKGVALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQFVLLKPGHPDAEARTTYVIKELNDKGIKTEQLQL-AQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV-EALKAHNKSIPVFGVDALPEALALVKSGALAGTVL....................................................................................................... 254
31 -9.960d2fn9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  12  2..KMAIV--ISTLNNPWFVVLAETAKQRAEQLG---------YEATIFDSQNDTAKESAHFDAIIAAGYDAIINPTDADGSIANVKRAKEAGIPVFCVDRG----INARGLAVAQIYSDNYYGGVLAGEYFVKFLKEKPYAELLLSAQPTWDRSNGFHSVVDQYEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALAMKACEAAGRDIYIFGFDGAEDVINAIKEGKQIVATI....................................................................................................... 241
32 -9.930d4irxa1 c.93.1.0 (A:39-325) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  15  1..EVVVS--FNDLSQPFFVAMRRELEDEAAKLG---------VKVQVLDAQNNSSKQISDLQAAAVQGAKVVVAPTDSKALAGAADDLVEQGVAVISVDRN----IAGGKTAVPHVGADNVAGGRAMADWVVKTYPAGRVVVITSSIERVKGVHDGLAAGGP--AFKIVTEQT-DQALTVTQNILTSMRDTPPDVILCLNDDMAMGALVRAAGLDSAKVKVIGFDAIPEALARIKAGE............................................................................................................. 233
33 -9.830d4yv7a_ c.93.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  15  2ALKIGFS--QATQQSPFYVALTDAAKAEAQAQG---------DELFYADANGDITKQNNDVQDLITRGINVLINPVDPKGVTPSLAAAEAAGIKVVT-------VDRPVESGAASFVGRDNKAGELVGKAAVDTLGPDGGKIIEIQGDAGGAVARDRRDGFQAANITIVEGPYCDYIRSKAVTAMQDLLQAHPDLKGVYAQNDDMALAMQVLAENNRDVKVFGVDGLMEAVRAIADGDQYVATAL...................................................................................................... 237
34 -9.780d3gbva_ c.93.1.0 (A:) automated matches {Bacteroides fragilis [TaxId: 272559]}  ali model 3D-neighbors follow..  10  2KYTFACLLP-KHLEGEYWTDVQKGIREAVTTYSDFN------ISANITHDPYDYNSFVATSQAVIEEQPDGVFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAF------FGQNSHQGYFAARMLMLLAVNDREIVIFRKIHEGIGFRQYMQEHHP--ACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSKVYIIGEYLQQRRKSDFSLIGYDLLERNVTCLKEGTVSFLIAQQPEL--------------------------QGFNSIKTLCDHLIFRKEVACTNYMP............................................. 276
35 -9.570d4wuta_ c.93.1.0 (A:) automated matches {Agrobacterium vitis [TaxId: 311402]}  ali model 3D-neighbors follow..  15  2..EIAVI--VKTVNSTFWQNVQKGADAAIGKQK------AHTITFQGPAAESAIADQVNMVENAVNRKVDAILAPSDPDALVPAVKKAWEARIPVVI---IDSMLSKDAEKYYQAFLATDNKAGELAAKAMIQKVGTEKIAVMS-GAGSEIGRVGGFTDYIKANKLQIVGPYYSQSQMATALNQTTDVLAANADLKGIFGANEPTAIMGRAIKQAGKKLVAIGFDG......................................................................................................................... 223
36 -9.530d4rxta1 c.93.1.0 (A:33-325) automated matches {Agrobacterium radiobacter [TaxId: 311403]}  ali model 3D-neighbors follow..  17  2EVTIPII--VKDTTSFYWQIVLAGARKAGKDL-------GVKVPELGAQAETDVNGQISILENAVAGKPAAIVISPTEFKALGKPVDEAAKSVPIIG--------SGADSKAFKSFLTTDNTQGRIAADGLAAAIKAMDVVIITSLEQRRTGFLDQVKTKYP--GLKVVADKYADGQATTGLNIMTDLITANPKIVGVFASNLIMAQVGQAIAENKLKVKVIGFDS......................................................................................................................... 226
37 -9.510d4kqca1 c.93.1.0 (A:25-340) automated matches {Brachyspira murdochii [TaxId: 526224]}  ali model 3D-neighbors follow..  15  1DPYIAVV--SKGFQHKFWVTVRDGAEAAAKQN-------GVKISFVGPETESDSKIQQDLLDSEINKNPDAIAFAAVTGDFTEQIKRIKEKNIPLIGFDSGILPDQAQGAVLAT-ASTDNRAAAAIVADKMFEALKTRIAAFTSDNKA--EGFVKRFTELAD-TAGKYALQVIVPTTQNEADIANEVNALRGKSV--------LGIYLSNEAMARGFLVVYKSAEAGAANTIVGDAQDGGDLVVMGF----DSGKPQLDAIRNGIIQGSVTQDPYSIGFQAVTLAYKASKGESVSNIDTGAKWYDKTNID..................................... 306
38 -9.460d4joqa1 c.93.1.0 (A:25-319) automated matches {Rhodobacter sphaeroides [TaxId: 349102]}  ali model 3D-neighbors follow..  14  5VGTIGIAIPSATH--GFMGGLNFHAQDTIKRLQEV------PQLDFVLATAGNAGKMVNDIEDMVATR-ALVVLPFESEPLTSPVQAVKEAGIWVTV---VDRGLSVEGIEDLY-VAGDNPGFGRVAGEYFAQHLESGKIVVLRIPTTLDNERVEAFTAAIEGSGIEVLDMQHGNWNRDDAFNVMQDFLSKYPQIDAVWAADDDMAIAMEAIAQAGREMWVMGGAGMKEIIRRIADGDP............................................................................................................ 239
39 -9.290d4rwea_ c.93.1.0 (A:) automated matches {Yersinia pestis [TaxId: 1035377]}  ali model 3D-neighbors follow..  20  2LNSIGVT--VGDLANPFFVQITKGVELEARKLA------GDKVKVTLVSSGYDLGQQVAQIDNFIAAKVDMIINAADSKGIGPAVKRAKDAGIVVVAVDVAAEGADA--------ITSDNTQAGAMACKYISDRLKEKNVVIINAIQNRVEGCESEFKKY----DIKVLSSNQNAKGSRE-LEVMTSLLAVNPKIDGVFAINDPTAIADLAAKQAQ-EFFIVGVDGSPDAEEALKRGG............................................................................................................. 231
40 -9.250d3e61a1 c.93.1.0 (A:61-320) automated matches {Staphylococcus saprophyticus [TaxId: 342451]}  ali model 3D-neighbors follow..  13  2...IGLLLP----SNPFFTLIARGVEDVALAHG---------YQVLIGNSDNDIKKAQGYLATFVSHNCTGMI--STAFNENIIENTLTDHHIPFVFIDRINNEHN---------GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAF-VQGIKYILDQQRIDY--KMLEATLLDNDKKFIDLIKELSIDSIICSNDLLAINVL-GIVQRYHFKVPIIGYDNIPFSEMTY--------------------PQITTIDQSAYHLGEI----------AVSQLLGLNTDNLTNNHKQLALTV........................................... 253
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.