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Query: d3iteb_ e.23.1.0 (B:) automated matches {Neotyphodium lolii [TaxId: 73839]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFLast
1 -157.000d3iteb_ e.23.1.0 (B:) automated matches {Neotyphodium lolii [TaxId: 73839]}  ali model 3D-neighbors  100  1TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMF 525
2 -126.000d3vnqa_ e.23.1.0 (A:) automated matches {Streptomyces sp. [TaxId: 1931]}  ali model 3D-neighbors follow..  25  6ARNSDLVSLFREVAATAPERTALSAED----------DRISYGRLDAWSDAVARTLLAEGVRPGRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAVAECKD------AEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVF--------DFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPYLAVIIDRGVTVINQTPTAFLALTRGGRDVSGLRYVIFGGEKLTAPMLRPWAKADRPRLVNGYGITETTVFTTFEEITEAYDASIIGRALPSFGTRVVGDD-GRDVAPGETGELWLSGAQLAEGYLRRPEAEKFPEVTSVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLR--LVCAYVAREGS------------ATTARELRNHIKTLLPAYMHPARYLPLPGLPR-TVNGKVDRAAVARSW 511
3 -126.000d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}  ali model 3D-neighbors follow..  26  20PRDKTIHQLFEEQVSKRPNNVAIVCEN----------EQLTYHELNVKANQLARIFIEKGIGKDLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEE---DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN--------SLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFFEQYINQKEITVITLPPTYVVHLD--PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETHSVPIGAPIQNTQIYIVDE-NLQLKSVGEAGELCIGGEGLARGYWKRPESQKFVDNPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY--LCAYFVSEK--------------HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPL-TSNGKIDRKQLPEP. 510
4 -123.000d4dg8a_ e.23.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}  ali model 3D-neighbors follow..  22  9.AHPTVVARFSEMAALHPHREAIRDRF----------GSVDYRQLLDSAEQLSDYLLEHYPQPGCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPV---------RHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCL---------GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLPGVLRQLIGERGADSAWLTASLFNTLVLDPDCLGGLRQLLTGGDILSVPHVRRALRHPRLHLVNGYGPTENTTFTCCHVVTDDDDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARASFVELPLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL--LCAWTGKA-------------------DASPQALLRQLPTWQRPHACVRVEALPL-TAHGKLDRAALLRR. 494
5 -121.000d3fcea_ e.23.1.0 (A:) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  22  1...MKLLEQIEKWAAETPDQTAFVWRD----------AKITYKQLKEDSDALAHWISSEYPDDRPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL---PVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE--------DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPLFASLEQSDIQVWTSTPSFAEMCLMEESMLPNMKTFLFCGEVLPNEVARKLIERPKATIMNTYGPTEATVAVTGIHVTEEYKSLPVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPSVSVGYLGSPEEKAFTMIDGERAYKTGDA-GYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDY--LLAVVVPGEHSFEKEF--------KLTSAIKKELNERLPNYMIPRKFMYQSSIPM-TPNGKVDRKKLLSE. 501
6 -114.000d5jjqa_ e.23.1.0 (A:) automated matches {Streptomyces sp. [TaxId: 1265536]}  ali model 3D-neighbors follow..  21  4.PVERLHEFLLTGARLTPEKPAVLELSGT------EPGYVSYRQLANRAESYAAALGGLGLDIGRVVLESDTSASAIAALLACSSLGLPFVPVTPETPAKRLLAVVDTVSPALYLQAEGGRREG-LPESVGTGRFGPGGLVIERAPRPGRGFRREVAPADPAYMVFTSGSTGRPKGVVMSHRAILSFYRGMLSQGI--------VGPESRVASTAPFQFDFSLLDIGLALGSGATVVPVPRALLRWPFVRFLRDSEATQVNGAPSIWRGALRHEADGGRIRGVLFSGEPFPLPEVRALQQAPLARIVNCFGSTESVAASFTDVPRPGLTKLSIGHAHPGAEMMLLDDDGVPVTEPGVTGHIHLRSGSLFTGYWGDPEARALVPDPGQTVFRTGDLAHRDATGELYFDGRADNQVKIRGNRVELTEVERRVAEFTGVAAASAVLLPVAESDPV--LAVFVELSPGAEFD------------EMELGAFCLEELPDYMAPQRIHVLDALP................. 500
7 -75.900d2v7ba_ e.23.1.0 (A:) automated matches {Burkholderia xenovorans [TaxId: 266265]}  ali model 3D-neighbors follow..  18  4.....FAAYLFRLNETRAGKTAYIDDT----------GSTTYGELEERARRFASALRTLGVHEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPI-------LGIAENDVVFSAAKLFFAYGLGNLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNR-AGAVEYGTTGRPVPGYEIELRDEA-GHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE---IRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVV---GVDHGGLVKTRAFVVLKREFAPSEI---------LAEELKAFVKDRLAPHKYPRDIVFVDDLP-KTATGKIQRFKLRE.. 507
8 -73.600d3c5ea_ e.23.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  14ASDVLDHWADMEKAGKRPPSPALWWVNG-----KGKELMWNFRELSENSQQAANVLSACGLQGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC--CDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT--------GLQASDIMWTISDTGWILNILCLMEPWALGACTFVHLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDK-GNVLPPGTEGDIGIRVKGIFSGYVDNPDKTAANIRGD--FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDP--VRGEVVKAFVVLASQFLSHD-------PEQLTKELQQHVKSVTAPYKYPRKIEFVLNLP-KTVTGKIQRAKLRDKE 534
9 -70.100d4isba_ e.23.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  16  3QLPSTVLDRVFEQARQQPEAIALRRCDG--------TSALRYRELVAEVGGLAADLRAQSVSGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVASAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFF----AVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENT--TSLLEILTTNAVATTCLVPTLLSKLVSELKTVPSLRLVGYGGSRAIAADVRFIEAT-GVRTAQVYGLSETGCTALCLPTDDGIEAGAVGRPYPGVDVYLAATDGIGPGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDG---VNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEE----ALVGLAVVASAELDESAA-------RALKHTIAARFRRESEPMARPSTIVIVTDIP-RTQSGKVMRASLAAAA 521
10 -67.900d5upta1 e.23.1.0 (A:2-513) automated matches {Streptomyces platensis [TaxId: 684832]}  ali model 3D-neighbors follow..  16  1.QHTTIGDVLREHRRSHPGRTALVDGP----------VRLTWPELDDRVNRLAGSLAASGIGGDRIMWLGQNSFRVYELIAAAGKLGAMVCVGYWRWAPPEMEFALRDFDPHLVVWQHQEIHETVARTREALGSDDTDGYEAFLAAGGLADPDLDIDPDSPVLVLYTAAMSGRQCGSLLSHTNLIAMATAAAWL--------GDIDHTTAFLNSGPMFHIGNHQFWGMPTLLMAGKNVIVRRVVAEEVRDLLVAEECTHAFLMPPTVAEIVRLNRDLSRLRATVAPHLWEGMATTDTRFTRSGAAAGRGYGQTELSGFAVTAA-YGGPAAGNAGRPGPGLTVRVLDTA-GRECAVGEAGEICARGTVVHRGYWNRDEVNAHRFRSG---WHTTDLGRREPDGSLTFLGTTTRMLKSAAENIFPAEVENCIEQHPAVREAAVIGVPNTR----QDVKAVVVLEPDAGVSE------------QEIIDHCRPRIASYKKPKSVAFAAALP-RTVSGARDYDALDKEY 506
11 -67.900d3r44a1 e.23.1.0 (A:1-502) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  20  4.....IGWMLRQRATVSPRLQAYVEPST--------DVRMTYAQMNALANRCADVLTALGIAGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRATVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAS--------TIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ----TKVWSLIVEERVCIGGAVPAILNFMRQVPEDAPDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKASAGRATMFTDVAVRGDD-GVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNG---FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK----EIAAAIVVADQNEVSEQ-------------QIVEYCGTRLARYKLPKKVIFAEAIP-RNPTGKILKTVLREQY 497
12 -65.900d3cw9a_ e.23.1.1 (A:) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. AL3007 [TaxId: 206162]}  ali model 3D-neighbors follow..  17  2...QTVNEMLRRAATRAPDHCALAVPAR--------GLRLTHAELRARVEAVAARLHADGLRQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG------LRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGT----EMAPGFFSEVRIVRIGVDEIVANGEEGELIVAASSAFVGYLNQPQATAEKLQDG---YRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR----QSVTACVVPRLGETLSA------------DALDTFCRSELADFKRPKRYFILDQLP-KNALNKVLRRQLVQQV 502
13 -65.800d5x8fa_ e.23.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  17  2...TEQPNWLMQRAQLTPERIALIYED----------QTVTFAELFAASKRMAEQLAAHSVRGDTAAILLQNRAEMVYAVHACFLLGVKAVLLNTKLSTHERLFQLEDSGSGFLLTDSSFEKKEYEHIVQTIDVDE-------KEAAEEIEIEAYMQMDATATLMYTSGTTGKPKGVQQTFGNHYFSAVSSAL--------NLGITEQDRWLIALPLFHISGLSALFKSVIYGMTVVLHQR----SDVLHSINRHEVTMISAVQTMLASLLEETNCPESIRCILLGGGPAPLPLLEECREK-GFPVFQSYGMTETCSQIVTLSPEFSMEKLSAGKPLFSCEIKIERDG--QVCEPYEHGEIMVKGPNVMKSYFNRESANEASFQNG---LKTGDLGYLDNEGFLYVLDRRSDLIISGGENIYPAEVESVLLSHPAVAEAGVSGAEDKK----KVPHAYLVLHKPVSA--------------GELTDYCKERLAKYKRPKKFFVLDRLP-RNASNKLLRNQLKDAR 480
14 -64.800d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  17  23.AGETFGDLLRDRAAKYGDRIAITCGN----------THWSYRELDTRADRLAAGFQKLGIQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW--------LDHSTVYLAALPMNYPLSSPGVLGVLYAGGRVVLSPSPS--DDAFPLIEREKVTITALVPPLAMVWMDAASDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDG-FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF---GERSCVFIIPRDEAPK-------------AAELKAFLRERLAAYKIPDRVEFVESFP-QTGVGKVSKKALREAI 529
15 -64.500d5bsra_ e.23.1.0 (A:) automated matches {Tobacco (Nicotiana tabacum) [TaxId: 4097]}  ali model 3D-neighbors follow..  15  15.NHLPLHSYCFENISEFSSRPCLINGAN--------KQIYTYADVELNSRKVAAGLHKQGIQKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKEGCLHFSVLTQANEHDIPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG----ENPNLYIHSEDVMLCVLPLFHIYSLN-LLCGLRVGAAILIMQK---IVSFLELIQRYKVTIGPFVPPIVLAIAKSPMDLSSVRTVMSGAAPLGKELEDTVRAKPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEACGTVVRNAEMKIVDPKTGNSLPRNQSGEICIRGDQIMKGYLNDPEATARTIDKEGWL-YTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAG--EVPVAFVVRSNGSTITE------------DEVKDFISKQVIFYKRIKRVFFVDAIP-KSPSGKILRKDLRAKL 528
16 -63.200d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  8DEELNLWDFLERAAALFGRKEVVSRLHT-------EVHRTTYAEVYQRARRLMGGLRALGVGGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALV-------HSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLERLKTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSTGLPIPLVRLRVADEEGRPPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG--FRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPK---QERPLAVVVPRGEKPTPE------------ELNEHLLKAGFAKWQLPDAYVFAEEIP-RTSAGKFLKRALREQY 527
17 -61.900d4futa_ e.23.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 258594]}  ali model 3D-neighbors follow..  17  8.........RLFDKLDDPHKLAIETAA---------GDKISYAELVARAGRVANVLVARGLQGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVLGPDGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDY--------WRFTPDDVLIHALPIYHTHGLF-SNVTLFARGSMIFLPKFDPDKILDLM---ARATVLMGVPTFYTRLLQSPRTTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNM-NTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDG--FITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD----EGVTAVVVRDKGATIDE------------AQVLHGLDGQLAKFKMPKKVIFVDDLP-RNTMGAVQKNVLRETY 498
18 -60.500d3o83a_ e.23.1.0 (A:) automated matches {Acinetobacter baumannii [TaxId: 557601]}  ali model 3D-neighbors follow..  15  24.IDQPLTRILTVGVQSHPHSLAIICGE----------RQLSYIELDRLSTNLATRLAEKGLGGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG--------LNSNTRLLCALPANFMLSSPGALGVLHAGGCVVMAPNPE--LNCFSIIQRHQVNMASLVPSAVIMWLEKAAQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDN-YYYSGDLVQRTPDGNLRVVGRIK.................................................................................................................. 435
19 -60.000d3ipla1 e.23.1.0 (A:2-477) automated matches {Staphylococcus aureus [TaxId: 158879]}  ali model 3D-neighbors follow..  15  1......DFWLYKQAQQNGHHIAITDGQ----------ESYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLG--------FDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK---AEQILTMIKNERITHISLVPQTLNWLMQQGLEPYNLQKILLGGAKLSATMIETALQY-NLPIYNSFGMTETCQFLTATPEMLHARPDTVGMPSANVDVKIKNPNK------EGHGELMIKGANVMNGYLYPTDLTGTFENGY---FNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDT----QVPKLYFVSESDISK--------------AQLIAYLSKHLAKYKVPKHFEKVDTLP................. 476
20 -59.600d2d1sa_ e.23.1.1 (A:) Luciferase {Luciola cruciata [TaxId: 7051]}  ali model 3D-neighbors follow..  14  15.EEGSAGTQLRKYMERYAKLGAIAFTNA------VTGVDYSYAEYLEKSCCLGKALQNYGLVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI-----YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTK---EETFLKTLQDYKCTSVILVPTLFAILNKSELDLSNLVEIASGGAPLSKEVGEAVARRNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWL-HTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDP--VAGELPGAVVVLESGKNMTE------------KEVMDYVASQVSNAKRLRGGVRVDEVP-KGLTGKIDGRAIRE.. 533
21 -59.000d5gxda_ e.23.1.0 (A:) automated matches {Dinoroseobacter shibae [TaxId: 398580]}  ali model 3D-neighbors follow..  15  54......FNAVDRHVQANGDRVAIIHD----SPVTHTKQEITYAELQERVSLLAGALRAKGIEGDRVLIYMPMVPQALEAMLACARLGAIHSVVFGGFAANELAVRIDDATPKAIIAASGAIDLATHKPDFCLIFQREQEVAHEAQYGVDPAECVPVAGNHPAYILYTSGTTGQPKGVLRPTAGHLVALNWTMKNI-------YNVDPGDVFWAASDVGWVVGHSYCYAPLIHGNTTIVFEGKPVAGTFWRVISEHKVKSFFTAPTALRAVKREDPDLSHLKTVYLAGERADPDTIQWTMDKLGVPVIDHWWQTETGWAIAANPMGIEHLPVSPSVAMPGYDVQVLDEG-GHPVAPGTLGAIAVKLPGTLPNLWQAEERVKSYLTTFPGYYETGDAGYIDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVIGVSDT--LKGQMPLGFLCLSAGVNRPH--------DEIAKECVKLVREKIGPVAAFKLACVVDRLP-KTRSGKILRGTMVNIA 597
22 -55.900d3ivra1 e.23.1.0 (A:4-398) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  17  2.HDFTLADVYRRNAALFPDRTAFMVDG----------VRLTHRDYLARAERLASGLLRDGVHGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPSDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVD--------AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK----AQAARDIEAHKVTVMAEFAPMLGNILDQAAQLASLRAVTGLDTPETIERFEA--TCPNATFWATFGQSETSGLSTF--APYRDRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNG---HHTGDMGRFDADGYLFYAGR.................................................................................................................... 394
23 -52.500d1nnma_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  15  74.....AANCLDRHLQENGDRTAIIWE----GDDTSQSKHISYRELHRDVCRFANTLLDLGIKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADDALKNPNVTSVEHVIVLKRTGS-DLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV-------FDYHPGDIYWCTADVGWVTGHSYLYGPLACGATTLMFEGVPNWPTMCQVVDKHQVNILYTAPTAIRALMAEGDDRSSLRILGSVGEPINPEAWEWYWKKEKCPVVDTWWQTETGFMITPLPGAIELKAGSATRPFFGVQPALVDNE-GHPQEGATEGNLVIT-PGQARTLFGDHEREQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHA--IKGQAIYAYVTLNHGEEPSP---------ELYAEVRNWVRKEIGPLATPDVLHWTDSLP-KTRSGKIMRRILRKIA 615

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.