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Query: d3iuya1 c.37.1.0 (A:213-439) automated matches {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVLast
1 -117.000d3iuya1 c.37.1.0 (A:213-439) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1TCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 227
2 -102.000d2i4ia3 c.37.1.0 (A:168-406) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  37  2......EATGNNCPPHIESFSDV-EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGERRKQYPISLVLAPTRELAVQIYEEARKFSYSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAV 238
3 -101.000d5gvra_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  38  2......LVEGDGIPPPIKSFKEM-KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKPFSKREGPYGLIICPSRELARQTHGILEYYCRPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINV 230
4 -88.500d3dkpa1 c.37.1.0 (A:139-378) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  31  13.......VQGTDLPDPIATFQQLYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-----NKGFRALIISPTRELASQIHRELIKISETGFRIHMIHKAAVAAKKFGKSSKKFDILVTTPNRLIYLLKQDGIDLASVEWLVVDESDKLFETGFRDQLASIFLACTSHVRRAMFSATFAYDVEQWCKLNLDNVISVSI 238
5 -81.500d3mwja_ c.37.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  40  4.....................KDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---ERGRKPRALVLTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
6 -80.600d3bera_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  40  10.............EEETKTFKD-LGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRLFALVLTPTRELAFQISEQFEALGSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 218
7 -79.600d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  30  4.....................TRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQ------AVITAPTRELATQIYHETLKITKRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
8 -79.100d4ct4b1 c.37.1.0 (B:95-301) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  34  5.....................EDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQ------AMVIVPTRELALQVSQICIQVSKGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL 206
9 -76.900d2z0ma1 c.37.1.0 (A:1-192) automated matches {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  33  1.........................MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL------------ELGMKSLVVTPTRELTRQVASHIRDIGRMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEA 190
10 -75.200d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  29  3..........TNYDKVVYKFDD-MELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQ------ALMLAPTRELALQIQKVVMALAHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
11 -74.700d2pl3a1 c.37.1.0 (A:47-278) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  32  19.............VNEITRFSD-FPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--TSTDGLGVLIISPTRELAYQTFEVLRKVGKHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 230
12 -74.500d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28  4.....................RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS------VLVMCHTRELAFQISKEYERFSKPNVKVAVFFGGLSIKKDEEVLKKNCHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLELDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
13 -72.700d2oxca_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  4.....................ESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQ------ILILAPTREIAVQIHSVITAIGIEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 205
14 -66.200d3peya1 c.37.1.0 (A:91-286) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  30  1................AKSFDE-LGLAPELLKGIYAMKFQKPSKIQERALPLLLHNRNMIAQSQSGTGKTAAFSLTMLTRVNPEDAS------PQAICLAPSRELARQTLEVVQEMGKKITSQLIVPDSFEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIV........ 196
15 -56.000d1gkub1 c.37.1.16 (B:6-250) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  28..............................FVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLAL---------KGKRCYVIFPTSLLVIQAAETIRKYAEAGVGTENLHGRIPKREKFMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN...... 223
16 -27.800d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  21  9........................SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGK---------SLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-----GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRKALRVIGLSATAP-NVTEIAE........... 190
17 -24.100d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  22.....................................GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------LTVVVSP---LISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGFRPEYAALLRQRFPTLPFMALTATADDTTRQ.............. 190
18 -23.300d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  2......................................VLRRDLIQPRIYQEVIYAKNCLIVLPTGLGKTLIAMMIAEYRLTKYGGK--------VLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS-PEKIMEVINNLGIEHIEY.. 187
19 -20.800d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  15  113........................................EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGK--------ILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGG--ASKDDKYKNDAPVVVGTWQTVVKQPKE----FSQFGMMMNDECHLA-----GKSISSIISGLNNCMFKFGLSGSLRDG................. 265
20 -17.600d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  15  1...................................................MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------RLRTLVLAPTRVVLSEMKEAFHGLD-----------KFHTQAFSAHGSGREVIDAMCHATLTYRMLEP-TRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPP................... 138
21 -14.700d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}  ali model 3D-neighbors follow..  19  3..................................................AVPQSFQVAHLHAPTGSGKSTK--VPAAYA----------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGV---------RTITTGSPITYSTYGKF---LADGGCSGGAYDIIICDECSTDATSILGIGTVLDQAETAGARLVVLATAT..................... 135
22 -14.500d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  70........................................SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI------------NELSTPTLIVVPTLALAEQWKERLGIFGEEYVG---EFSGRIKELK--------PLTVST---YDSAYVNAEKLGNRFMLLIFDEVHHL-----AESYVQIAQMSIA-PFRLGLTAT..................... 204
23 -12.900d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  111..............................................................GDVGSGKTVVAQLAILDNYEA---------GFQTAFMVPTSILAIQHYRRTVEFSKFNIHVALLIGATTPSEKKSGLRNGIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR-----FGVKQREALMNKGKMVDTLVMSATIPRSM................ 246
24 -12.400d3kx2a1 c.37.1.19 (A:1-270) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  19  82...............................KYVDILKIRRELPVRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFV-----FDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKL-------GEEVGYSIRKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAERTLATDILMGLLKQVVKRRPDLKIIIMSATL--DAEKFQRYFNDAPL.... 264
25 -11.800d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  13  10.....................................AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYG-AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA....................... 195
26 -11.400d4q7ka_ c.37.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  16  4....................................................VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT-IKENLKWGREDATDDIISLPEGYDSRVERGGRNFSGGQKQRLSIARAKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT....................... 173
27 -11.300d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  55........................................ETTPDQAQAINAVLSDMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQVAVLVPTTLLAQQHYDNRDRFANWPVRIEMISRFRSAKEQLAEVAEGIDILIGT-----HKLLQSDVKFKDLGLLIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 233
28 -11.000d2ff7a2 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  26....................................................IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEISELREGYNTIVGEQGAGLSGGQRQRIAIARAKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA....................... 195
29 -10.900d5y4za1 c.37.1.14 (A:178-481) automated matches {Zika virus (strain mr 766) [TaxId: 64320]}  ali model 3D-neighbors follow..  16  4..................................................PSMLKKKQLTVLLHPGAGKTRRVLPEIVREAIKKRL--------RTVILAPTRVVAAEMEEALRG-------------RYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPI-RVPNYNLNIMDEASSIAARGYISTRVE-----MGEAAAIFMTATPPGTRDAFPDS.......... 152
30 -10.400d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  9  6...............................................................................................WVRVDLPEIYKEVRKLLREMLRDKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMA--LKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS---------KEIFSDKRMKKA 128
31 -10.300d5x7ka_ c.37.1.0 (A:) automated matches {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  15  35....................................................IQPGDVLGIIGPSASGKTLARLLVGIWPVSEGIVRLDNADPYIGYLPQDIELFAGTIAENIARFNDIDSEKVIEAA-AGVHELILRFPNGYDSVIGNGGAGLSGGQKQRIGLARALYVVLDEPNSNLDDAGEKALNQAIMFLKQRNKTVVLITHRTNLLSMTSKLLLLV...... 220
32 -9.150d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  153.............................................QKVAAAVALTRRISVISGGPGTGKTTT-----VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK-------------ALRQLPLTDEQKKRIPEDASTLHRLLGALRHHAGNPLHLDVLVVDEAS-MIDLPM---MSRLIDALPDHARVIFLG-----DRDQLAS........... 302
33 -9.140d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebrafish (Danio rerio) [TaxId: 7955]}  ali model 3D-neighbors follow..  13  78......................................................NSYGCIMADEMGLGKTLQCI--TLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKN---DNQTYLALNSMNAQRRVLISGTPIQNDLLEY............. 238
34 -9.110d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  16......................TKSKYGSHYGEKVFDGYREWVPWRSKLAAMILKGHRLVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYHRDHIFIH......................... 205
FFAS is supported by the NIH grant R01-GM087218-01
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Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.