current user: public

If you have questions about the server, please let us know.

Query: d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .
# Score Template Links and tools%idFirst MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHMENHNTTCEAAHFGLWRICTKRIALGEDRSCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIDSEDTVWIEYYYSWSFACACAAFVLLFLGGISLLLFSLPRLast
1 -101.000d3jbre_ f.63.1.1 (E:) L-type calcium channel Gamma-1 subunit {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}  ali model 3D-neighbors  100  1MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHMENHNTTCEAAHFGLWRICTKRIALGEDRSCGPITLPGEKNCSYFRHFNPGESSEIFEFTTQKEYSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIDSEDTVWIEYYYSWSFACACAAFVLLFLGGISLLLFSLPR 206
2 -37.100d4p79a1 f.63.1.1 (A:2-186) Claudin-15 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  1....SVAVETFGFFMSALGLLMLGLTLSNSYWRVST--VHGNVITTNTIFENLWYSCATDSLG-------------VSNCWDFP-----------SMLALSGYVQGCRALMITAILLGFLGLFLGMVGL-SKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTAAAS 185
3 -33.500d3x29a_ f.63.1.1 (A:) Claudin-19 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  1.....SGLQLLGYFLALGGWVGIIASTALPQW-KQSSYAGDAIITAVGLYEGLWMSCASQSTG-------------QVQCKLYD-----------SLLALDGHIQSARALMVVAVLLGFVAMVLSVVGM-TAKSRVAISGGALFLLAGLCTLTAVSWYATLVTQEFNPSTPVNARYEFGPALFVGWASAGLAMLGGSFLAA..... 181
4 -7.290d3wmm1_ f.3.1.0 (1:) automated matches {Thermochromatium tepidum [TaxId: 1050]}  ali model 3D-neighbors follow..  16  13ILDPRRVLVSIVAFQIVLGLLIHMIVLSTDLWLDDNIPVSYQA................................................................................................................................................................... 56
5 -6.840d3ag3c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  16......LTGALSALLMTSGLTLTTNMLTMYQWWESTFQGHHTPAVQKGLRYGMILFIISEVL-----------------WAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGV----YFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFR 219
6 -6.140d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  1........................................................................................SKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNEHKVADVGKYNAGMMFWSIMSMIFVLLVTGVIIWR..... 135
7 -5.960d3mksb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  1LKRDLITSLPFEISLKIFNYLIINSLGVSQNW-----------NKIIRKSTSLWK....................................................................................................................................................... 48
8 -5.960d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  11....RQALVGLATFLFVLALLIHFILLSTENWLEGAS......................................................................................................................................................................... 45
9 -5.830d1n3ha_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  35............................TRGWLHPNDKVMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIA-MQSISFASGGDPDTAEYVAYVAKDPVNQPEGLAQDVISTIGQAFELRFKQYL................ 206
10 -5.770d3h90a1 f.59.1.1 (A:8-208) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  13  1......................................................................................................LVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRY----------SLQPADDNHSFGHGSLAALAQSMFISGSALFLFLTGIQH 97

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.