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Query: d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLLast
1 -98.500d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors  100  1ESRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL 232
2 -89.900d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  26  1.........RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKDPDFLNWLNHFLAQIKHDGSYDELYERWF 224
3 -86.700d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  28  1ESKLDQILSSGELKVGTTGDWDPMAMKDPTNKYKGFDIDVMQELAKDMGVKITFVPTEWKTIVSGITAGRYDIST-SVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKKYSTWKSLNNKDVTIATTLGTSQEEKAKEFFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQL-AIVPDGEKNPAFLAMMVSKDQVWNDYVNEWIKSKKSSGFFNKLLAKYN 232
4 -84.200d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  21  2VRSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG---PRTAKDLQ--GKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKNKSLLDALNRALAELMQDGTYARISQKWF 229
5 -82.400d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  19  1..........KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANN-TTIKSIDDLN--GKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWF 218
6 -82.200d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  1...IEAIKSKGKLVVALNPDFAPFEYQDGKNQIVGSDIELAKAIATELGVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLA--QKKVGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAADLNFEKEQDDSYAVAMKKSKELKEAVDKTIQKLKESGELDKLIEDAF 232
7 -81.700d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  24  1..AIDEIKSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFRPKTYEDLV--GKTVAVQIGTTGDIEVSK-YDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLVIS--SGVLSSEQYGIAVRKDTDLLEFINSVLRELK-KSPYDVLIEKWF 225
8 -81.500d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  14  1.....ASVSARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA--YHTFADLK--GKKVGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMASDPDYYGKGLGIAVRKNDALLQEINAALDKVKASPEYAQMQEKWF 227
9 -81.400d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  15  1......IVEGRTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELN--KYSIGYPRGMAYSDLIKNDLSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKM-PIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWM 228
10 -80.700d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  24  1.DNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG---ITDAAGLK--GKRLGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAV-NIPSFDAPAGFVIRKNDALRNALDKGLKEAMQDGTWKKLHEKWF 229
11 -80.000d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  1.TGWEQIKDKGKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLK--GKKAAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDKYMPNKQALVMKKNAALQKKMNEALKEMSKDGSLTKLSKQFF 234
12 -78.800d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  15  3GDNWSKYQSNKSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGITVNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSG--ITTAKDMT--GKTLGAQAGSSGYADFEANVANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNYNVFTVGLETEAFAVGSRKDTTLVKKINEAFSSLYKDGKFQEISQKWF 239
13 -78.400d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  16  1.....ATPKKDVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFKLKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTD-DSIKSWKDLK--GKTLGAKNGTASFDYLNAHAKGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFATP--IKPIPDGQYGFAVKKNPELIEMFNNGLANLRANGEYDKIIDKYL 226
14 -78.000d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  21  2.......ATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP--VKNALDLK--GKTIGVQNATTGQEAAEKLFGKPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWF 224
15 -77.900d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  18  1..........EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVF-KGENKHPLPLTQ--YRSVAVQTGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTIDLPEDQWVLGYGIGVASRPALALKIEAAVQEIRKEGVLAELEQKWG 221
16 -77.700d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  15  1...........TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDGADLSG---------IVAAQTATIQAGYIAE--SGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLREDGELRGKFDAAITSMKEDGTLNTMIKKWF 211
17 -77.200d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  15  1.........SLNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVD--SKISTFDDLH--GKKIGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKISIGEGYSIMANPQFVLIKKINKILLEMEADGTYLRLYSEYF 228
18 -77.200d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  20  4GSLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSN--IKSIADIK--GVKTAQSLTSNYGEKAKA--AGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLKGNDEAVAKFSTAINELKADGTLKKLGEQFF 233
19 -76.500d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  18  2..........KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPELDKFTKIFE--GVKFGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGKGVGVGIRKDADLKALFDKAIDAAIADGTVQKLSQQWF 248
20 -76.500d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  21  2.NSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKD--SNITSVEDLK--DKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDF-KMGIKELGNKDVIAPAVKKDKELKEFIDNLIIKLGQEQFFHKAYDETL 231
21 -76.300d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  20  2........LPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI-QPTLESLK--GKHVGVLQGSTQEAYANDNWKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAAGPSVKDKKYFGDGTGVGLRKDTELKAAFDKALTELRQDGTYDKMAKKYF 231
22 -76.100d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  17  3........RHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSALKSGRVDV-LQGISWSEKRARQIDFTPPHTIVYHAIFARR-DSPPAAGLEDLR--GRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQDAELLARFSEGLAILRKTGQYEAIRAKWL 223
23 -75.200d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  19  1...........PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIESSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGDIRSIDDLP--GKVVATTAGSTAATYLREH--HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWF 218
24 -74.900d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  17  1............LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVRNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLK--NKEVAVVRDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWL 220
25 -74.100d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  20  1EDILERSKSTNEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKINGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKG--SQIKSVDDLNAS-TTVLAVKGSTSAANIRQHAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYELV--GGTFTNEPYGIAINKQENFLKAVNQALEEMHADGTYDKIYQKWF 232
26 -74.000d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  20  2ENKLEELKEQGFARIAIA-NEPPFTAVGADGKVSGAAPDVAREIFKRLGVAVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIDNPDAKIGAPGGGTEEKLALEAVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAKGDEALRDAFDVELAKLKESGEFAKIIEPYG 238
27 -72.300d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  14  1.....ARLKGITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADVPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYC-NLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWF 240
28 -71.800d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  15  2..........QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLA--GKRVITSATSNGALVLKKINEEEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSA-IKEKVVGDVLSNAKVYFMLGKETKLSKKVDEALQSIIDDGTLKKLSEKWL 227
29 -67.400d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  1.GKLESIKSKGQLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKE--KKYKSLADMK--GANIGVAQAATTKKAIGEAAKDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEI----LPDSFEPQSYGIVTKKDPAFAKYVDDFVKEH--KNEIDALAKKWG 230
30 -66.900d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  18  1..........KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSD--IKSYNDIA--GHSTQVVQGNTTVPMLQKFNKNKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSDQKPYVYFIQDQKDLQKFVNKRLKKLYENGTLEKLSKKYL 226
31 -56.500d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  37MTNDSSMLDRLFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFDLKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTE-LSGIHDPKLHHPSQGFRFGTVRESSAEDYVEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWY 285
32 -49.400d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  15  6AREQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVTVEELIAKLRSGEADM-AGALFVNSARESFLSFSRPYVRNGMVIVTRQ-DPDAPVDADHLD--GRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASADLPPAEIALATTRGTELMSILNKALYSISND-ELASIISRW. 234
33 -45.200d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  3............LSIVTLEE-APFVIVEDKKCCKGFCIDILKKLSRTVKFTYDLVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFYSPPFRFGTVPNGSTERNIRNNYPYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 274
34 -40.100d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  20  1.......LIGRHLRLGSVEE-QPFMFFATEGCWSGMVNDMVVKLSEDLGFTYEYTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGTTLNQVLELLDQDKYKWGVIGSRHPETLLKTHRDSRYSRLVDKDLNHAIETLRGGLFVFIDEGPVLAHNLISDCD--VFSVGEEFQSFEYAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWS 245
35 -36.600d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  3............LKIVTIHQ-EPFVYVKPPQCCYGFCIDLLIKLARTMNFTYEVHLVAWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRSAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDL--VTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV 282
36 -36.200d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  1........GGVVLRVVTVLE-EPFVMVSENKKYQGFSIDVLDALSNYLGFNYEIYVATWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLSNGSENNVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWW 257
37 -35.500d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15  2...........RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNFEPVRWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKVQFGTIRGGATSVYFSESNDFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCEL--TQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWF 253
38 -35.200d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  1.........NKTVVVTTILE-SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFD-VFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 253
39 -15.700d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  11  27...................................YEGLASGLKAQFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKGE----------SGNVKRVGLDSRSADQKMTDVFFGDSDVERVDSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDD--YPMQQLLRAVVDKHALLAHQQR.. 218
40 -12.400d5b7ha1 c.94.1.0 (A:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}  ali model 3D-neighbors follow..  12.........QGQLKLGCIPTIAPFLL------------DLVQEINQRFQLNLLLREDTTTNLLTALRHGELDVLILALPVEIDGME----SRVVGQDPFKMVISRHQIKVPIKYDDLPDESVFLLEKEHSLTESACKLTDKEKINPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSSRSKTFNQLAEVVSE............ 214
41 -11.900d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  3.......DTSGVLTIATTHTQARYSLPE-----------IKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLV---AFPWFRWHHSLLVPHDHQISPLTLESIAKWPL-ITYRQGITGRSRIDDAFARKGLLSAQDSDVIKTYVALGLGIGLVAEQSSGE---QEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKR... 215
42 -11.300d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}  ali model 3D-neighbors follow..  12  3.......PDKGSLYVATTHTQARYALPG-----------IKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLV---MLPCYHWNRSIVVTPEHTKGSVSIEELAQYPL-VTYTFGFTGRSELDTAFNRARIVFTATDADVIKTYVRLGLGVGVIASMAVDP--VSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH........... 207
43 -11.300d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  10  1.........TGRLNIAVLPTIAPYLL------------RVFPIWKKELGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLE----DDLLYYEEFLGYVSRCEEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPS-QKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRS............ 203
44 -10.700d3jv9a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  1.........EGAFKLGLIFTVAPYLL------------KLIVSLRRTAKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIV----TEPLYDEPFFVIVPKGHELDAVSPRMLGEEQVLLLTEGNCMRDQVAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTE--NDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQ............ 206
45 -10.500d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  4.........SGPLHIGLIPTVGPYLL------------HIIPMLHQTFKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFI----EVPLFDEPMLLAIYEDHNREAVPMADLAGEKL-LMLEDGHCLRDQAMGFCFEADTHFRATSLETLRNMVAAGSGITLLPALAVPPERK-RDGVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRA............ 205
46 -9.380d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  10  1......MPETANIKLGYIPEAAPLIIAQEKGFFAKYGMTGVEVSKQA----------NWASARDNVTIGSQGGGIDGGQWTNGNKVPMYVLAQLITQGNGIAVAPMAADYIKGFNKTNGRKFKAAHTPNVNQDFWIRYWFAAGGVDPDTDPAETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLVDKNPKATKALLKGIMEAQQ............ 245
47 -9.250d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}  ali model 3D-neighbors follow..  13  1...........ELKVVTATNFLG---------------QLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAYNVFFSADEKSPEKLDNQGFALP-YAIGKLVLWSAKPGLVDNQGKVLAGNGWR-IAPYGLAGTQVLTHL-AQERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGY 227

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.