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Query: d3ksma1 c.93.1.0 (A:39-313) automated matches {Hahella chejuensis [TaxId: 349521]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGYLAVQRALDLVRGKPIPAFTDTGVRLLQLast
1 -96.500d3ksma1 c.93.1.0 (A:39-313) automated matches {Hahella chejuensis [TaxId: 349521]}  ali model 3D-neighbors  100  1PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMYAGEISNLVVQNPEYMGYLAVQRALDLVRGKPIPAFTDTGVRLLQ 275
2 -83.200d4rxta1 c.93.1.0 (A:33-325) automated matches {Agrobacterium radiobacter [TaxId: 311403]}  ali model 3D-neighbors follow..  29  4.TIPIIVKDTTSFYWQIVLAGARKAGKDLGVKVPELGAQAETDVNGQISILENAVAGK-PAAIVISPTEFKALGKPVDEA-AKSVPIIGIDSGADSKAFKSFLTTDNTQGGRIAADGLAAAIKAKEEGDVVIITNTPGAGSLEQRRTGFLDQVKKYPGLKVVADKYADGQATTGLNIMTDLITANPKIVGVFASNLIMAQGVGQAIAENKLSDKVKVIGFDSDDKTLGFLKSGAIAGLVVQDPYRMGYDGIKTALAVSKGEKVEANVDTGANLVT 279
3 -82.500d5dkva1 c.93.1.0 (A:29-329) automated matches {Agrobacterium vitis [TaxId: 311402]}  ali model 3D-neighbors follow..  24  6.RIALIPGLTTDAFYITMHKGAEAAAAAIGAQIIFQGAP-DFNPVTQVPVLDAVIAKK-PDAILIAPTDTTQLVQPLKKAADAGIPMITVDTFIGTGDPLSYIASDNVLGGEIAARSLALAI--GDKGKVYVSNVKPGVSTTDQREQGFKSEMAKHPGITVLETQFNDNDANKAASQLQAVYARNPDLAGVFGANLFSGLGSANGVQQAGQSGTIKVVAFDAPGSVVDNLKSGLIDFAIAQHPAEIGYYGVISAYAHLTGQSIPTKIGTGFTVIN 285
4 -81.700d3brsa_ c.93.1.0 (A:) automated matches {Clostridium phytofermentans [TaxId: 357809]}  ali model 3D-neighbors follow..  23  3.YMICIPKVLDSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRK-PDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKNLV--RKSGKIGVISFVKNSKTAMDREEGLKIGLSDDS-NKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKALKLLKKEYVPKQLDSGCALIT 274
5 -80.900d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  3.EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKN-YKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNVEAFVTTDNVAVGAKGASFIIDKLGAEG-GEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVPLDKAPEFKLVD 282
6 -79.800d5hsga_ c.93.1.0 (A:) automated matches {Klebsiella pneumoniae [TaxId: 272620]}  ali model 3D-neighbors follow..  20  2PTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFNS--NDNPVAQNDAIENYIQQG-VKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQAAQVGVDNIEGGRIIGQYFVDYVKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKAMTAAENLITGNPDLTAIYATGEPALLGAIAAVENQGRQKDIKVFGWDLTAKAISGIDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTILVPATVVT 274
7 -79.700d4wuta_ c.93.1.0 (A:) automated matches {Agrobacterium vitis [TaxId: 311402]}  ali model 3D-neighbors follow..  30  2.EIAVIVKTVNSTFWQNVQKGADAAIGKQAHTITFQGPAAESAIADQVNMVENAVNRK-VDAILLAPSDPDALVPAVKKAWEARIPVVIIDSMLSKDAYQAFLATDNKAAGELAAKAMIQKV--GTEGKIAVMSYVAGAGSEIGRVGGFTDYIKANSKLQIVGPYYSQSQMATALNQTTDVLAANADLKGIFGANEPTAIGMGRAIKQAGKAGKLVAIGFDGNQDLQEFVKDGTLEATVVQGSYQMGEKGVDTLLKLLSKEKVEKFIDTGVVVVT 276
8 -78.900d4ylea_ c.93.1.0 (A:) automated matches {Burkholderia multivorans [TaxId: 395019]}  ali model 3D-neighbors follow..  21  5.KVALVMKSLANEFFLTMENGAKEYQKHNASQFDLIGIKDETDTANQIRIVEQMIVSK-VDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVNVPFVGPDNRKGARKVGDYLAKKL--KAGDQVGIVEGVSTTTNAQQRTAGFQDAM-KAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGKQGKVYVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAQAELSGVVETPVDLVT 286
9 -75.700d4zjpa1 c.93.1.1 (A:24-292) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  24  3.TIALTVSTLDNPFFVSLKDGAQKKATELGYKLVVLDS--QNDPSKELSNVEDLTVRG-AKVLLINPTDSAAVSNAVAIANRNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKL--GDGAKVIQLEGLAGTSAARERGEGFKQAIEAHK-FDVLASQPADFDRTKGLNVTENLLASKGSVQAIFAQNDEMALGALRAISAAGK--KVLVVGFDGTEDGVKAVKSGKLAATVAQQPELIGSLGVETADKILKGEKVDAKIPVALKVVT 268
10 -74.900d4irxa1 c.93.1.0 (A:39-325) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  21  1.EVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDA--QNNSSKQISDLQAAAVQG-AKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKAVPHVGADNVAGGRAMADWVVKTY--PAGARVVVITNDPGSSSSIERVKGVHDGLAAGPAFKIVTEQTANSKRDQALTVTQNILTSMRDPDVILCLNDDMAMGALEAVRAAGLDAKVKVIGFDAIPEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVSLKPVLIT 274
11 -74.800d3l6ua_ c.93.1.0 (A:) automated matches {Exiguobacterium sibiricum [TaxId: 262543]}  ali model 3D-neighbors follow..  16  3..VGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS--QNSRISEREQILEFVHLK-VDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISG-KIVVGIDGNRAILEAVDMKSMDATVVQSAEEMMKVAFSALKLHTKNKKIPDRFYTYSYLYD 274
12 -74.600d4ry9a_ c.93.1.0 (A:) automated matches {Verminephrobacter eiseniae [TaxId: 391735]}  ali model 3D-neighbors follow..  21  4.KIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDA--QGKLQKQISDVEDLVTRG-VKLLIINPADSEGLVNAVNNASANGVKVVVIDSTLNRANFVTQVQSSNSINGALVGHWVIEEVGNKS-LKIALLSGEKGNPVGQERRLGVLSGIIEKADLTVVGQGWGHWNDEGGLKAMEDLLVANKDINMVLGENDSMVLGARRAIESAGRTGILLVAAADAQKEALALIKQGKYGVTGLNDPALVARTAIDLGVKVVKGEDVPKQTLTTPAAIT 283
13 -74.200d2h3ha1 c.93.1.0 (A:1-305) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  22  3.TIGVIGK-SVHPYWSQVEQGVKAAGKALGVDTKFFVPQ-KEDINAQLQMLESFIAEG-VNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELL--GGKGKVVIGTGSLTAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKDGKVDYVIDTGVDVVT 285
14 -73.400d5hqja1 c.93.1.0 (A:26-313) automated matches {Burkholderia graminis [TaxId: 396598]}  ali model 3D-neighbors follow..  21  7.SVAVIPK-VAVPFFDDCNKGAKTAADKAGVKYQWVVP-QNTQGSTQVQIIEDLISRH-VDGIAISVNEPKSVESVMKRAEQSGIKVLTYDSDSPKSGRSMYIGTNNEQAGATMAETMGKAL--NGQGEVAIITGQLGAVNLNERIAGIKKGLAKYPGIKVVETQGTDDDLARGVSVVETTLRAHPNLKGIFGVSQVGGPAVAKVLNTGAMKGKLEVLAFDDLPDTLKGLKDGYIQGIMVQRPVTMGSLAVDHLVAQIQGQEQPKDIDTGVTVVT 279
15 -72.900d4kqca1 c.93.1.0 (A:25-340) automated matches {Brachyspira murdochii [TaxId: 526224]}  ali model 3D-neighbors follow..  21  2PYIAVVSKGFQHKFWVTVRDGAEAAAKQNGVKISFVGPETESDSKIQQDLLDSEINKN-PDAIAFAAVTGD-FTEQIKRIKEKNIPLIGFDSGILPDQVLATASTDNRAAAAIVADKMFEALKTRDNKAKIAVLQLDNSDTGIGRAEGFVKRFTELADGDAATQVIVPTTQNEADIANEVNALRGKSVLGIYLSNEAMARGFLVVVGDAQDGGDLVVMGFDSGKPQLDAIRNGIIQGSVTQDPYSIGFQAVTLAYKASKGESVSN-IDTGAKWYD 301
16 -72.800d2fn9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  24  2.KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS--QNDTAKESAHFDAIIAAG-YDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGAVAQIYSDNYYGGVLAGEYFVKFLKEKYEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGR-TDIYIFGFDGAEDVINAIKEGKIVATIMQFPKLMARLAVEWADQYLRGERFPEIVPVTVELVT 278
17 -72.700d3rota_ c.93.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  20  3.KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATY-PSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDNPYLVFLGSDNLLAGKKLGEKALELT--PSAKRALVLNPQPGHIGLEKRAYGIKTILQDKG--IFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDQPQVYSFDKTPNTVSLIHKKLVNYVMDQQPFLMGYLSITQLVLMNRYQLNPVNINTAM.... 273
18 -72.700d5braa_ c.93.1.0 (A:) automated matches {Ochrobactrum anthropi [TaxId: 439375]}  ali model 3D-neighbors follow..  17  18.TIATVVKVDGIAWFDRMRDGVDQFKADTGNDVWMVGP-SQADAAAQVQIVENLIAQG-VDAIAIVPFSVEAVEPVLKKARERGIVVISHEASNIQNVDYDIEAFDNKAYGANLMKELGKSM--GGKGKYVTTVGSLTSKSQMEWIDGAVEYQKAFPEMSATGRLETYDDANTDYNKLKEAMTAYPDITGILGAPMPTSAGAGRLIAEGGLKGKVFFAGTGLVSVAGEYIKNDDVQYIQFWDPAVAGYAMNMLAVAALEKKNDQIKAGLNLGLPG 289
19 -72.400d3g1wa_ c.93.1.0 (A:) automated matches {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  23  2.TYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGA-AQYDIQEQITVLEQAIAKN-PAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL--DGEGEVAVITL-PNQLNHQERTTGFKETLEEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFHLHHGLTLPLYVDTGITIVT 283
20 -70.300d4joqa1 c.93.1.0 (A:25-319) automated matches {Rhodobacter sphaeroides [TaxId: 349102]}  ali model 3D-neighbors follow..  20  7.TIGIAIPSATHGFMGGLNFHAQDTIKRLQEVYPQLDLATAGNAGKMVNDIEDMVATRNISALVVLPFESEPLTSPVQAVKEAGIWVTVVDRGLSVEGEDLYVAGDNPGFGRVAGEYFAQHL--ESGKKIVVLRGIPTT-LDNERVEAFTAAI-EGSGIEVLDMQHGNWNRDDAFNVMQDFLSKYPQIDAVWAADDDMAIGAMEAIAQAGRTEEMWVMGGAGMKEIIRRIADGDLPANVTYPPAQISTAIELTALKLVSSTPVSGRFIIGSQLVT 281
21 -70.100d3d02a_ c.93.1.0 (A:) automated matches {Klebsiella pneumoniae [TaxId: 272620]}  ali model 3D-neighbors follow..  15  3.TVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGP-SSTDAPQQVKIIEDLIARK-VDAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHMAKRM--GGKGGYVIYVGSLTVPQHNLWADLLVKYQKEYPDMHVTRRMPVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDITEGITYDPATAGYALAAVASTLLNGKTIEPGFELKELGKA 274
22 -69.800d4kvfa_ c.93.1.0 (A:) automated matches {Kribbella flavida [TaxId: 479435]}  ali model 3D-neighbors follow..  18  13.KIAYLPKQLNNPYTDVEVGGGKVAVGEIKGEYKLVGP-NDASASSQVSYINTLIQQQ-QDVIVVAANDPNAVCPSLNQARKADIKVVTFDSDAAKTCRDAFINQTTQGIGESLVKMAKELA--GGSGEIAVLSATPNATNQNSWIEVMKTELAKNAKLKLVKIAYGNDDDQKSFTEAQGLLQSYPNLKVIVSPTTVGIAAASRYVSASSYKGKVAITGLGLPNQMRQYVKDGTVKKFALWNPADIGYLAAYAGAALKSGQITGAQGEKFKAGK. 284
23 -69.200d1tjya1 c.93.1.1 (A:27-340) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}  ali model 3D-neighbors follow..  15  3.RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGP-TEPSVSGQVQLVNNFVNQG-YDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYIQGTPKQLGSMLVEMAAHQVD-KEKAKVAFFYSSPTVTDQNQWVKEAKAKIQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIG 274
24 -68.700d2x7xa_ c.93.1.0 (A:) automated matches {Bacteroides thetaiotaomicron [TaxId: 226186]}  ali model 3D-neighbors follow..  24  3.RIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA--GDDNSKQAEDVHYFMDEG-VDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSL--KGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAPGAYQAAKMAGREKEMIFVGIDALPNGLELVLDSVLDATFIYPT--NGDKVLQLAMDILEKKPYPKETVMNTAVVD 272
25 -68.200d4yv7a_ c.93.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  25  4.KIGFSQATQQSPFYVALTDAAKAEAQAQGDELFYADA--NGDITKQNNDVQDLITRG-INVLVINPVDPKGVTPSLAAAEAAGIKVVTVDRPVESG-AASFVGRDNKAMGELVGKAAVDTLGPDG-GKIIEIQGDAGGAVARDRRDGFQAAVSGRPNITIVEGPYCDYIRSKAVTAMQDLLQAHPDLKGVYAQNDDMALGAMQVLAENNR-TDVKVFGVDGLMEAVRAIADGDYVATALNDPDAEGRLAIQTAAKVARGESVPEFVDAGTGLVD 272
26 -67.300d4yo7a_ c.93.1.0 (A:) automated matches {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  18  8.VIGVSISNL-DEFLTYMQDAMKEEAANYDFEFIFSDA--QNDSTQQMAQVENFISRN-VDAIIVNPVDTTSAVDIVNMVNDAGIPIIIANRTFDGDQATAFVGSESIQSGLLQMEEVAKLL--NNEGNIAIMDGELGHEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVANNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKVAVQAANGEDVEDAM-IPYELVT 276
27 -66.500d4rwea_ c.93.1.0 (A:) automated matches {Yersinia pestis [TaxId: 1035377]}  ali model 3D-neighbors follow..  21  4.SIGVTVGDLANPFFVQITKGVELEARKLADKVKVTLVSSGYDLGQQVAQIDNFIAAK-VDMIILNAADSKGIGPAVKRAKDAGIVVVAVDVAAEG--ADATITSDNTQAGAMACKYISDRL--KEKGNVVIINGPPVS-AIQNRVEGCESEFKKYPDIKVLSSQNAKGSREGGLEVMTSLLAVNPKIDGVFAINDPTAIGADLAAKQAQR-NEFFIVGVDGSPDAEEALKRGGFVATPAQDPQVMASKAVEVGYGILQGNPAPKDILIPVTLID 276
28 -65.400d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  3.KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASG-AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKTVPLVMLAATKIGERQGQELYKEMQKRGKESAVMAITANELDTARRRTTGSMDALKAFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHIVGMNDSTVLGGVRATEGQGFKADIIGIGINGVDAVSELSKATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEKFTEVTDVVLIT 289
29 -64.800d3gbva_ c.93.1.0 (A:) automated matches {Bacteroides fragilis [TaxId: 272559]}  ali model 3D-neighbors follow..  19  7...CLLPKHLEGEYWTDVQKGIREAVTTYNISANITHY-DPYDYNSFVATSQAVIEEQ-PDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLA--VNDREIVIFEGVIGSNQQESREIGFRQYMQEHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSKVYIIG--EYLQQRRKSDFSLIGYDLLERNVTCLKEGTVSFLIAQQPELQGFNSIKTLCDHLFRKEVACTNYMPIDLLT 281
30 -63.900d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}  ali model 3D-neighbors follow..  15  42.KISVVYPGQVSDYWVRNIASFEKRLYKLNINLNQVFTRPNADIKQQSLSLMEALKSK-SDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTDKHQPFLYVGFDHAEGSRELATEFGKFF--PKHTYYSVLYFSEGY-ISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGR-EDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSGDFEIVT 318
31 -63.500d4wt7a_ c.93.1.0 (A:) automated matches {Agrobacterium vitis [TaxId: 311402]}  ali model 3D-neighbors follow..  18  9.RIGISTAGTDHFFDLQAYNAQIAEVKRLGGEPLAVDA--GRSDGKLVAQLQTLIAQK-PDAIVQLLGTLTVIDPWLKRARDAGIPVLTIDVGSSH--SLNNSTSDNWGIGKDLALQLVSDI--GGEGNVVVFNGFYGVTPCAIRYDQLVNVIKYFPKVKIIQPELRDVIPQDAFAQVTAILNKYPEIKAIWSAWDIPQLGATQALAAAGR-TEIKTYGVDGSPEVLQLVADSPAAADVAQQPAELGRQAIQNVALLLSGKTLPRESYVPALLAN 282
32 -60.900d3ma0a1 c.93.1.0 (A:1-307) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  20  4.KIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA--NGNEETQMSQIENMINRG-VDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIV---PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYGKIKVVGDQWDGWLPENALKIMENALTANNNIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTTLN..... 271
33 -59.500d2fvya_ c.93.1.1 (A:) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  3.RIGVTIYKYDDNFMSVVRKAIEQDAKAADVQLLMNDS--QNDQSKQNDQIDVLLAKG-VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKDKAYYVGTDSKESGIIQGDLIAKHWAANGQIQFVLLKGEPGHPDAEARTTYVIKELNDGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAKVVRVPYVGVD 298
34 -56.200d4wwha_ c.93.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  18  4.TVGIAMPTKSSERWVADGQNMVDQFKAFGYDTDLQYG--DDVVQNQVSQIENMITKG-VKLLVIAPIDGSSLTNTLQHAADLKIPVISYDRLIGTPNVDYYATFDNTKVGVLQANYIVDTLGVAGPFNLELFAGSPDDNNATYFFQGAMSVLQPYIDSGKLVVKTLRWDGGLAQSRMDNLLSQSGRVDAVLSPYDGISRGVISALKSAGYGNAPIVTGQDAELASVKSIVAGEQTQTVFKDTRELAKAAVQEADAVLTGGTPQV.......... 285
35 -41.400d3hs3a1 c.93.1.0 (A:57-318) automated matches {Lactobacillus acidophilus [TaxId: 1579]}  ali model 3D-neighbors follow..  16  6..IGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALI---STNSDVKKYQNAII-NFENNNVDGIITSAFT-------IPPNFHLNTPLVMYDSANINDDIVR-IVSNNTKGGKESIKLLSK-----KIEKVLIQHWPLSLPTIRERIEAMTAEASKLK----IDYLLEETPENNPYISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRRNLKDDFQLVGYDNNI--LCGYTSPTIS-TIDQNPKLIGQTAAHRLLDLMSGNNSTRNSIIDVLPI. 257
36 -41.100d3e61a1 c.93.1.0 (A:61-320) automated matches {Staphylococcus saprophyticus [TaxId: 342451]}  ali model 3D-neighbors follow..  18  2..IGLLLPDMSNPFFTLIARGVEDVALAHGYQVLI---NSDNDIKKAQGYLA-TFVSHNCTGMISTAFNENII---ENTLTDHHIPFVFIDRINNE---HNGISTNHFKGGQLQAEVVRK----GKGKNVLIVHENLLIDAFHQRVQGIKYILDQQR----IDYKMLEATLLDNDKKFIDLIKE-LSIDSIICSNDLLAINVLGIVQRYHFKAEIQIIGYDNIP--FSEMTYPQIT-TIDQSAYHLGEIAVSQLLGLNTDNLTNNHKQLALTVK. 254
37 -40.500d2rgya_ c.93.1.0 (A:) automated matches {Burkholderia phymatum [TaxId: 391038]}  ali model 3D-neighbors follow..  15  4..IGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLHD--EDLDELHRMHPKMVFLNRAFDALPDAS-FCPDHRRGGELAAATLIEH----GHRKLAVISGPFTASDNVERLDGFFDELARHGARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTMAVSALARFQQLGISGDVSVIGYDDDYSAAYAAPA----TSVHIPTAELTQNAVRWLINQCYGTKWEIFREFPVTVS. 268
38 -40.100d3ctpa_ c.93.1.0 (A:) automated matches {Alkaliphilus metalliredigens [TaxId: 293826]}  ali model 3D-neighbors follow..  21  4..IGLMVPNISNPFFNQMASVIEEYAKNKGYTLFL---NTDDDKEKEKTYLE-VLQSHRVAGIIASRSQCE------DEYANIDIPVVAFENHILDN--IITISSDNYNGGRMAFDHLYEK----GCRKILHIKGPEVFEATELRYKGFLDGARAK-DLEIDFIEFQHDFQVKMLEEDINSMKDIVNYDGIFVFNDIAAATVMRALKKRGVSQEVQIIGFDNSF--IGELLYPSLT-TINQPIEALAYTIIELLIKIINGEGVLEDYIMEVKLI. 259
39 -40.100d3bila_ c.93.1.0 (A:) automated matches {Corynebacterium glutamicum [TaxId: 196627]}  ali model 3D-neighbors follow..  20  2..IGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNEDATTMSGS----EFLTSHGVDGIICVPNEECA--NQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELLAHN----NALPIGYLSGPMDTSTGRERLEDFKAACANS-KIGEQLVFLGGYEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVKDVSVIGFDTHP--LFALQPHPLT-VIDQNVEQLAQRAVSILTELIAGTVPSTKTTIPTALI. 261
40 -39.600d3d8ua_ c.93.1.0 (A:) automated matches {Vibrio parahaemolyticus [TaxId: 670]}  ali model 3D-neighbors follow..  17  3..IALIIPSLFEKACAHFLPSFQQALNKAGYQLLL--GYSDYSIEQEEKLLSTFLES-RPAGVVLFGSEHSQ--RTHQLLEASNTPVLEIAELSSKASYLN-IGVDHFEVGKACTRHLIEQ----GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKTDIAIICLEGSSMGEHAYPS----TSAEFDYERMGTKAAEKLLHAIKGEPEERPTSMGFKLK. 264
41 -39.200d2iksa_ c.93.1.0 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  15  6..IGLVIPDLENTSYTRIANYLERQARQRGYQLLI--ACSEDQPDNEMRCIEHLLQR-QVDAIIVSTSLPPE-HPFYQRWANDPFPIVALDRALDREHFTS-VVGADQDDAEMLAEELRKF----PAETVLYLGALPELSVSFLREQGFRTAWKDD-PREVHFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKSDLAIATFGDNE--LLDFLQCPVL-AVAQRHRDVAERVLEIVLASLDEPRKPGLTRIKRNLY. 268
42 -39.100d3egca_ c.93.1.0 (A:) automated matches {Burkholderia thailandensis [TaxId: 271848]}  ali model 3D-neighbors follow..  19  5..VGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREA----GQFFERRVDGLILAPSEGEH--DYLRTELPKTFPIVAVNRELRIPGCGA-VLSENVRGARTAVEYLIAR----GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLRPDVEIVSFDNLP--WMAFLDPPLP-VVEQPTRRIGQEAMRMLIHMIEGTGNATEMRLQTRFV. 266
43 -38.300d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  3..IGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAV--HNLLAQRVSGLIINYPLDDQ-DAIAVEAACTNVPALFLDVSDQTP--INSIIFSHEDGTRLGVEHLVAL----GHQQIALLAGPLSSVSARLRLAGWHKYLTRN-QIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRADISVVGYDDTEDSSCYIPP----TTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLV. 263
44 -37.900d3gyba_ c.93.1.0 (A:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  20  5..IAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPI----TSALSMRPDGIIIAQDIPD------FTVPDSLPPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDL----GHTHIAHLRV--GSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLREDLSIIGYDNTP--LAQTRLINLT-TIDDNSIGVGYNAALLLLSMLDPEA-EIMHTLQPSLI. 261
45 -37.700d3h5oa1 c.93.1.0 (A:71-339) automated matches {Chromobacterium violaceum [TaxId: 536]}  ali model 3D-neighbors follow..  20  3..VLVLIPSLANTVFLETLTGIETVLDAAGYQMLI--GNSHYDAGQELQLLRAYLQH-RPDGVLITGLSHAE--PFERILSQHALPVVYMMDLADDG--RCCVGFSQEDAGAAITRHLLSR----GKRRIGFLGA-QLDERVMKRLDGYRAALDAARDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFCCNDDLAIGALARSQQLGIAERLAIAGFNDLQPAAWCTPP----TTVATPRRDIGVHAAKALLQLIDGEEPARRADLGFRLM. 264
46 -37.700d4rk6a_ c.93.1.0 (A:) automated matches {Weissella paramesenteroides [TaxId: 585506]}  ali model 3D-neighbors follow..  14  3..VGVVVPLIHTNFADEIIKGLYETTISSGYELLITYLDEDEDHQYQV----QTLLSRQVGAVFMLSLDIPS--WMIDKLLEEQISVISLTALLSEQ--ISAVTSNEFEMMNSIVDYLIDM----GHKNIALVGDTKTTNISSTRRTNFIKSMTDHNAYENIFLYGNDHSYETGYTSVTTGYDNQLPFTAAIATADMVGQGLINAMSDHGKTEDLSIVTIDGLQ--QTEIARPKLT-TVKQDFPEIGRIAMQLFLDSDSEKTEPQIIYIPTELI. 265
47 -37.700d3jy6a1 c.93.1.0 (A:65-328) automated matches {Lactobacillus brevis [TaxId: 387344]}  ali model 3D-neighbors follow..  16  6..IAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTL----RAIGSRGFDGLILQSFSNPQ---TVQEILHQQMPVVSVDREMDACPWPQ-VVTDNFEAAKAATTAFRQQ----GYQHVVVLTSELESRTRQERYRGILAAAQDV---DVLEVSESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLIQTVTATGFADTD--FIRRMEPKLT-LITQNPFLMGASSAEIMLRQLAGEKVAPE......... 255
48 -37.400d3cs3a_ c.93.1.0 (A:) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  13  8..IGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHL----------FIPEKMVDGAIILDWTFPT--KEIEKFAERGHSIVVLDRTTEHRNIRQ-VLLDNRGGATQAIEQFVNV----GSKKVLLLSGPEKGYDSQERLAVSTRELTRFG----YEIIQGDFTEPSGYAAAKKILSQQTEPVDVFAFNDEMAIGVYKYVAETNYQKDIRIIGFDNSE--LGAFVQPRLA-TIAYSKHRWGMVAAEKIIHLMRGEAAESEHIYTRFIEG 261
49 -37.300d3jvda_ c.93.1.0 (A:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  16  4..VGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANSVQAQDVVME----SLISIQAAGIIHVPV--------VGSIAPEGIPMVQLTRGELGPGFPR-VLCDDEAGFFQLTESVLGG----SGMNIAALVGEESLSTTQERMRGISHAASIYG----VTFHFGHYSVESGEEMAQVVFNNGL--DALIVASPRLMAGVMRAFTRLNVRHDVVIGGYDDPE--WYSFVGAGIT-TFVPPHEEMGKEAVRLLVDLIENPELPGDVVLQGQVI. 255
50 -37.200d3miza_ c.93.1.0 (A:) automated matches {Rhizobium etli [TaxId: 347834]}  ali model 3D-neighbors follow..  15  5..FGIITDYVTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEI----KMFQSHRIDGVLYVTMYRRIV---DPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLER----GHRRIGYIRLNPILLGAELRLDAFRRTTSEFG-ISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRQDVSIVGFDDFRTVTMALKPE---TTAALPYYDLGREGAKWLNDLIAGEKIPGSRVVSCKLV. 274
51 -37.000d3hcwa1 c.93.1.0 (A:56-339) automated matches {Staphylococcus aureus [TaxId: 158878]}  ali model 3D-neighbors follow..  15  7..IGLVLKGRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDE---VYKMIKQRMVDAFILLYSKEND--PIKQMLIDESMPFIVIGKPTSDDHQFTHIDNDNILASENLTRHVIEQ----GVDELIFITEKGNFEVSKDRIQGFETVASQFNDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEKDVMTATFNDSY--LTEIASPPQT-CIDIKPRMLGQQAGSAILNILKNKDVIELVIIDTELK. 277
52 -36.900d3c3ka1 c.93.1.0 (A:7-277) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  20  5..LLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSC----TLLSGKMVDGVITMDALSEL------QNIIGAFPWVQCAEYDPLSTV-SSVSIDDVAASEYVVDQLVKS----GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTESGLSQDVAVVGFDGVD--ISQITVPALT-TVQQPSEQIGMKAVSLLLEQIHSDVLTVHHLLPWKFV. 266
53 -36.800d3k4ha1 c.93.1.0 (A:7-284) automated matches {Bacillus cytotoxicus [TaxId: 315749]}  ali model 3D-neighbors follow..  17  5..LGLVMPSFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNG---VVKMVQGRQIGGIILLYSREND--RIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISL----GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVKDVSIVSFNNAL--LSEIASPPLS-TVDVNIYQLGYEAAKALVDKVENAESTKCIIIPHKLL. 273
54 -36.700d3e3ma1 c.93.1.0 (A:69-345) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  19  3..VGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLL--GYTAYSPEREEQLVETMLRR-RPEAMVLSYDGHTE--QTIRLLQRASIPIVEIWEKPAHPIGHT-VGFSNERAAYDMTNALLAR----GFRKIVFLGEDDDWTRGAARRAGFKRAMREAG--QEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVAEQVSVVGFGNFEVSRFASPE----STVRVDPIAIGRETGSLILRLLDPKQRSPQTAQHITL.. 265
55 -36.400d2qu7a_ c.93.1.0 (A:) automated matches {Staphylococcus saprophyticus [TaxId: 342451]}  ali model 3D-neighbors follow..  16  5..IAFIVPDQ-NPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDL----ETFVSQNVSAIILVPVKSKF-----MKREWLKIPIMTLDRELESTSLPS-ITVDNEEAAYIATKRVLES----TCKEVGLLLANPNISTTIGRKNGYNKAISEF-DLNV-QQLGTNAQIYSGYEATKTLLSKGIK--GIVATNHLLLLGALQAIKESEKEKDVIIVGFDDSY--WNEIYTPKLT-VISQPVKEMGQVAAKMIYKLIKGKDVTSIKLSTKLIIR 268
56 -36.300d4rk0a_ c.93.1.0 (A:) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  17  4..IGVIVPDITNPFFAQLIRGIESVLYKENFILILCNADQDVTREHEY----TELIRRSVDGFVIASSEISN-QTINETLRAKKIPFIVLDQKKAEGFSDA-VLTDDYRGGQLAAKHLQEQ----RHEQVIVVMPPHAPVNIQQRLKGFCSVYTEKV------LIETELSKTGGYQAVPEILKTEST--GIFAINDEIAFGLYRGLAEAGKKEDYSIIGYDNVD--MCEYVSPPLT-TIAQPVFQLGQTTATLLLERIHQPAKDEEQTLPVQLI. 259
57 -36.300d2h0aa_ c.93.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  2..VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPILSLARLKRY---LENTTLAYLTDGLILASYDLTE--RFEEGRLPTERPVVLVDAQNPR---YDSVYLDNRLGGRLAGAYLARF----PGPIFAIAVEEERRTVFAERMAGFQEALKEAGPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTRDVRVLGFDGHP-----FAEEAGLSTIAQPVEAMGARAAQLLLERMRGYQGPREVRFEPVLV. 265
58 -36.100d4rkqa1 c.93.1.0 (A:62-341) automated matches {Arthrobacter sp. [TaxId: 290399]}  ali model 3D-neighbors follow..  20  12..VGLAIPDLTNPYFPAFASSVVELATLRGWHVVV--DDYGHGGRSGLDAVEHL--APQVDAVIGYLGGYAD-----AQTVLGRRPLIVLDENPGGA--AGSINFDYQHAAKVAVAQLMDS----KRQHIAYLEAGSASESCTVRGKAVAGRLDELG----WSLIVAEETAEAAREAAAAFLREHPETDGILAFNDLMAAGVLKALSGSGRREDCAVIGMDGIP--LGELLSPQLS-TMALDLREVGRAAVELLVGLLSGAVTPGSQSSRTTL.. 270
59 -36.000d3brqa_ c.93.1.0 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  19  4..LGLVVTNTHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQA----QYLLDLRCDAIMIYPRFLSV-DEIDDIIDAHSQPIMVLNRRLRKNSSHS-VWCDHKQTSFNAVAELINA----GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAEQVSVIGFDDIAIAPYTVPA----SSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLI. 268
60 -35.900d3tb6a_ c.93.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  4..IGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRG----ENLLSQHIDGLIVEPTKSAL-IGYYLNLEKNGIPFAMINASYAELAA-PSFTLDDVKGGMMAAEHLLSL----GHTHMMGIFK-ADDTQGVKRMNGFIQAHRERESPDMIVTFTTEEKESKLLEKVKATLEKNSK-TAILCYNDEIALKVIDMLREMDLKEDMSIVGYDDSH--FAQISEVKLT-SVKHPKSVLGKAAAKYVIDCLEHKKPKEDVIFEPELI. 274
61 -35.700d4rk4a_ c.93.1.0 (A:) automated matches {Lactobacillus casei [TaxId: 321967]}  ali model 3D-neighbors follow..  17  4..IGVLVSRVTNPFFAGLFDAIERELHAHGYQVMITQTYDDPEAEERF----KQLKSRELDGVILASVEAPD--RVMAVAKAFPGRVVVVNADVQIPGATS-LVLPHYQATRDALDYLFNQ----GHRRFAYVSGISGAHHGQSRTQAFLDFMQAHQLVAQDLLFGQIHTAKEGQAVGKQLASLAPN-DAVFTNSDEVAVGVIDSLLAADVKDDIAVMGYDDQP--FAPFAKIPLT-TVHQPVASMAAAATHELLKGLGRQVAQTQPTLHLSLK. 270
62 -35.500d5ufha_ c.93.1.0 (A:) automated matches {Bifidobacterium animalis [TaxId: 442563]}  ali model 3D-neighbors follow..  13  3..LGLAIFDFSQPFASYLADQIIVCAREHHYGVIINTYGQNEHGLARA----RQANNLAADGWIVFADHAMG---QHSKMLDQSYPLVLTGDWDAYGKVDQ-VTMPNVEAMRYTTNRLLDS----GYRSIALFGADGSEGTQELRVQGYMQAYEEHG--MDMLFSGGLLTSDSGVRATNLMMDQGVRPDAIICLNDAMALGALHQLQVRGIRDDVQVVGFDNVPEATYANPS----TTIDPHIDSYARHAVDMLIERIQGYDGARVYTSDFTLV. 275
63 -35.300d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  3..IGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAY----SMMAQKRVDGLLVMCSEYPE-PLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIER----GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRQDVSLIGYDNVR--NARYFTPALT-TIHQPKDSLGETAFNMLLDRIVNKREEQSIEVHPRLI. 267
64 -35.300d3kkea_ c.93.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  17  2..IGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQL----RLVSEGRVDGVLLQRREDFD--DDMLAAVLEGVPAVTINSRVPGR--VGSVILDDQKGGGIATEHLITL----GHSRIAFISGTAIHDTAQRRKEGYLETLASAGRSEAAWVVDAGWEADAGSAALNTLLGKPDGPTAVVVASVNAAVGALSTALRLGLREDLSIVGINTTWVSDTVYPA----TTVRLPLQRLGEVAADVLMEHLGGRALTD.......... 258
65 -35.200d4kmra_ c.93.1.0 (A:) automated matches {Sanguibacter keddieii [TaxId: 446469]}  ali model 3D-neighbors follow..  19  6..IGLAVPELGQAFFAQLADEVIRVAAEQDLVVLVEQTGGLRERELEA----RNPRLSLTDGLLLAPL---GLTQDDVLPDPAGRPLVVLGEPLFPGPVDH-VTMQHEAAARAATEHLLGL----GRRRVMLLGAHATTGVAALRYAGYREALTAAG--DDLVVPVETWDRSSGAEAMARVLDAGVRMDAVFAMNDDLALGALRSLQERGVAGDVALMGFDDVADGRYTYPS----TTVEPGRHDIARAAVTMLSERIADAG-PRLTAPEFRLV. 273
66 -35.100d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  5..VAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEH----GVLKRRNIDGVVLFGFTGIT-----EMLAHWQSSLVLLARDAKG---FASVCYDDEGAIKILMQRLYDQ----GHRNISYLGVPHSDTTGKRRHEAYLAFCKAHKLHPVAAL--PGLAMKQGYENVAKVIT--PETTALLCATDTLALGASKYLQEQRI-DTLQLASVGNTP--LMKFLHPEIV-TVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATL.. 254
67 -35.000d3g85a_ c.93.1.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 272562]}  ali model 3D-neighbors follow..  16  2PTIALYSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTD---CLHLEKGISKENSFDAAIIANISNYDLE--YLNKASLTLPIILFNRLSNK---YSSVNVDNYKMGEKASLLFAKK----RYKSAAAILTESLNDAMDNRNKGFIETCHKNGKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISDDIEIVAIGMNDREYTEFSTPPVT-IVDIPIEEMAGTCISLVEKLINRDIEPTSILFDGPLI. 267
68 -34.700d3huua_ c.93.1.0 (A:) automated matches {Staphylococcus haemolyticus [TaxId: 279808]}  ali model 3D-neighbors follow..  15  5..IGLIQKSSQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHE---VKTMIQSKSVDGFILLYSLKDD--PIEHLLNEFKVPYLIVGKSLNYEN-IIHIDNDNIDAAYQLTQYLYHL----GHRHILFLQESGHYAVTEDRSVGFKQYCDDVK----NDCVVIKSMNDLRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLREDIQTATFNTSF--LTENATPSQT-SVNINPDVLGFTAGNTIIDVLRNETISREKLISTQIV. 269
69 -34.700d4o5aa_ c.93.1.0 (A:) automated matches {Bifidobacterium animalis [TaxId: 555970]}  ali model 3D-neighbors follow..  18  6..IGLVLGYDAEPYIMRLISGLGSALEERDYSLLVRMSMDDDD---EVSILEDWIATGNVDALLLLNLEIGD-PRIELMKNNPQMPCLALADSSLTSGLPT-LMSDDAAASGTMIRHLALF----GHKNIARVAGPEELGHSYIRDAAFSEITTELG----YRCLHTDYTPESGAEATKRLLSVEPRPTAIIYDNDVMALAGESVASVKGVREDLSIISWGDSF--MNVAAHPPIT-ALSRNILESGRLAAQLMLKLIDGEDVENVEEPPYELI. 270
70 -34.600d3bbla1 c.93.1.0 (A:63-338) automated matches {Chloroflexus aggregans [TaxId: 326427]}  ali model 3D-neighbors follow..  19  8..WTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPFSEDRS---QIDIYRDLIRSGNVDGFVLSSINYND--PRVQFLLKQKFPFVAFGRSNPDWDF-AWVDIDGTAGTRQAVEYLIGR----GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQPIETGYILRGEGTFEVGRAMTLHLLDLSPE-TAIMTLNDTMAIGAMAAARERGLTTDLAIIGFDDAPMVQYLFPP----SSVRQPIAEAGRKCIELLVAIVEGREPEKHILLQPSLI. 272
71 -34.600d3k9ca_ c.93.1.0 (A:) automated matches {Rhodococcus jostii [TaxId: 101510]}  ali model 3D-neighbors follow..  18  1.RLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAV----QALMRERCEAAILLGTRFD---TDELGALADRVPALVVARASGLPGVGA-VRGDDVAGITLAVDHLTEL----GHRNIAHIDG-ADAPGGADRRAGFLAAMDRHGLSASATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRSGRDADISVVGYDDSRLARIPHVQ----TTISQDATHMAEAAVDGALAQISGDKAVDLVLAPHLVRR 260
72 -34.600d2o20a_ c.93.1.1 (A:) Glucose-resistance amylase regulator CcpA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  13  5..VGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVEKEEKV----ETFLSKQVDGIVYMGSSLDE--KIRTSLKNSRTPVVLVGTIDGDKEIPS-VNIDYHLAAYQSTKKLIDS----GNKKIAYIMGSLKDVENTERMVGYQEALLEANEFDENLVFEGNYSYEQGKALAERLLERGAT--SAVVSHDTVAVGLLSAMMDKGVKEDFEIISGANSP--ITQYTYPTLT-SVNQPLYDLGAVAMRLLTKLMLKEDVENQLVLDHEIF. 265
73 -11.700d4gnra_ c.93.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  14  4.KIGFNESGSLAAYGTAEQKGAQLAVDEIGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAV-VGPATSGATAAAVANATKAGVPLISPSATTKGQDYLFIGTFQDSFQGKIISNYVSEKL---NAKKVVLY-----TDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGK-IVNQARGMGI--DKPIVGGDGGEEFVQQATAEKASNIYFISGFSLAYDSVHLVANAAKGAKNSGEIKDNLAKTK 309
74 -11.200d3snra_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316057]}  ali model 3D-neighbors follow..  8  6.TVGISTTGPAAALGIPERNALEFVVKEIGHPIKIIVLDDGGDPTAATTNARRFVTESKADVI-MGSSVTPPSVAISNVANEAQIPHIALAPLPITPERAKWS-----QPIPIMGKVLYEHMKKNNVKTVGYIG--YSDSYGDLWFNDLKKQGEAM-GLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAAL-PQTTLRERGYNGLIY........................................................... 217
75 -10.400d3sg0a_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  11  5.KIGITASGPGAALGQPQSKTVAALPKEIGEKVTYFALDDESDPTKAAQNARKLLSEEKVDVL-IGSSLTPVSLPLIDIAAEAKTPLMTVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKT----GAKKVGYIG--FSDAYGEGYYKVLAAAAPKL-GFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVL-PQKALRERGFKGAIY........................................................... 220
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.