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Query: d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EIPELQSDAIITLSSAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAMCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKGEACVLKFYLAPKFLast
1 -71.900d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors  100  1EIPELQSDAIITLSSAEFLKITKDFSALGDDSITIGCTKNEVTLTTKGAMCETCMTLSALENVDSNGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKGEACVLKFYLAPKF 127
2 -61.700d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  31  1KIEELQYDSTLSLPSSEFSKIVRDLSQLSDS-INIMITKETIKFVADGDIGSGSVIIKPFVDMPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKF 128
3 -59.000d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  36  2.IPEQEYSCVVKMPSGEFARICRDLSHIGDA-VVISCAKDGVKFSASGELGNGNIKLSQTSNVEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADGHLKYYLAPKI 129
4 -55.300d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  1..PELELPAKIVMDAGEFKKAIAAADKISDQ-VIFRSDKEGFRIEAKGDVDSIVFHMTETEL------IEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGAKVEYILAPRI 120
5 -54.200d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  23  1..PELPFTAKVVVLGEVLKAAVKAASLVSDS-IKFIARENEFIMKAEGETQEVEIKLTLEDE---GLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDGRLTFLLAPR. 121
6 -54.100d3ifva2 d.131.1.2 (A:113-243) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  19  9DIPDLDLAANIVLEGTHLDRGIKAADMVSDH-IRLRVDGAEETFHIEAEGDTDDVDLSLPP----ADLISIEAGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIGMGTITYMLAPR. 131
7 -53.100d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  22  1.....EFPFKAQLLTITFADIIDELSDLGEV-LNIHSKENKLYFEVIGDLSTAKVELSTDN----GTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQGYGDFYIAPRA 118
8 -52.200d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  19  1.....EFDIKATINASGLKNAIGEIAEVADT-LLISGNEEKVVVKGEGENKVEVEFSKDTG----SLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGKVTYLLAPKL 118
9 -17.500d5w7za3 d.131.1.0 (A:249-379) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  12  4.IPE-SSSSKLVINRKMFADSIERIAIITVEAVKLSLSRETLEISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVK-SDVVELYFSDVSAPVLIKFPENPKDIFVVMP.. 128
10 -14.300d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  4.LPK-NPDKHLEAGCDLLKQAFARAAILSNEGVRLYVSENQLKITANNP---------EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALK-CENVRMMLTDSVSSVQIEDAASQSAAYVVMP.. 119
11 -14.200d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  3.........DVIMTGELLKTVTRAIVALVSE-ARIHFLEKGLHSRA---VDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIKEPRI 122
12 -14.000d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  4.IPE-TFKTKVVVSRKELRESLKRVMVIASKSVKFEIEENVMRLVSKSDYGEVVDEVEVQKE----------GEDLVIAFNPKFIEDVLKHIE-TEEIEMNFVDSTSPCQINPLDISGYLYIVMP.. 119
13 -13.700d5wcea3 d.131.1.0 (A:251-372) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  13  4.IPR-DNAKILTLDNDLFAKAVDRVATISAESVKLAVEPGRITLTVRNEAGQAVEEVEVDYD----------GEPFEIGFNARYLLDVCGQIA-GPQAEFRFADPASPTLVVDPVDPGVKYVLMP.. 119
14 -12.800d3aixa1 d.131.1.0 (A:1-126) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  12  7.............DADAFSYIFRTLEEFIDE-ITLDFTSDGLKIRG---IDPSRVTFIDILIPAGYFEEYNVEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKVTLD.............. 102
15 -12.300d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  8.............GAKEFAQLIDTASKLIDE-AAFKVTEDGISMRA---MDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQ.............. 103
16 -12.000d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  10  7.............DVRDLKAIIQALLKLVDE-ALFDIKPEGIQLVA---IDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSPEVVKLTLS.............. 102
17 -10.800d3p91a1 d.131.1.0 (A:1-127) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  14  10.............EAALFKRVVESLKSTIDK-TNFDCSDAGIAVQC---MDNSHVSLVSLLIETDAFDEFQCLKPITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSITSEG........... 108
18 -10.200d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  8.............QGSILKKVLEALKDLINE-ACWDISSSGVNLQS---MDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDN...................... 95
19 -10.000d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  8.............EASLFKRIIDGFKDCVQL-VNFQCKEDGIIAQA---VDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNT...................... 95
20 -9.580d3ifva1 d.131.1.2 (A:2-112) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  16  2.........KAIVSAATLRDALDSVSVLVDE-CKIRLNEESLSIRAVDPANVGMVDLT----LDAAAFESYEAHGGVIGVNLSRLEEVAGMAGAGDLIHLTLDEET-LNIRIDGLSYTLALI..... 110
21 -9.260d1dmla2 d.131.1.2 (A:170-319) UL42 {Human herpesvirus type 1 [TaxId: 10298]}  ali model 3D-neighbors follow..  12  1..PQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVDDCRAVLRRLQVGGGTLKFFLVPSL 130
22 -9.010d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}  ali model 3D-neighbors follow..  11  3.......SVITEIKAEDLQQLLRVSRGLQIDTIAITNKDGKIVINGYNKVEDSG---LTRPKYSLTLTDYDGSNNFNFVINMANMK-------QPGNYKVMLWGAGDKVAA-KFESSQVSYVIA... 109

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.