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Query: d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst WQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYTVTTGLast
1 -114.000d3rlff1 e.70.1.1 (F:10-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1WQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGTLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYTVTTG 251
2 -6.230d3ag3b1 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  8  1....MAYPMQLGFQDATSPIMEELLHFHDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTILPAIILILIALPSLRILYMMDE.............................................................................................................................................................. 89
3 -6.210d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  15  7..NVIIPCLLFSFLTGLVFYL-----DSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPGKYMLFTMIFVISSIIITVVVINT...................................................................................................................................................................... 88
4 -6.150d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}  ali model 3D-neighbors follow..  17  7..NFITPCVLISFLASLAFYL-----ESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPGKYLMFIMSLVTGVIVNCGIVLNF...................................................................................................................................................................... 88
5 -5.880d1lnsa2 b.18.1.13 (A:551-763) X-Prolyl dipeptidyl aminopeptidase PepX {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  6  140.................................................NQSLLTVSDLKADEWFTIKFELQPTIYH-------LEKADKLRVI-LYSTDFEHTVRDNRKVTYEIDLSQSKLIIPIESVKN........................................................................................................................ 213
6 -5.820d2wdqd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  6FILVRATAIVLTLYIIYMVYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYG........................................................................................................................................................................ 98
7 -5.360d3wg3a1 b.29.1.0 (A:0-160) automated matches {Agrocybe cylindracea [TaxId: 64608]}  ali model 3D-neighbors follow..  12  60..................................................................YLLHIAFRLQENVIVFNSRQPNAPWLVEQRVSNVANQFIGSGGKAMVTVFDHGDKYQVVINEKT......................................................................................................................... 123
8 -5.300d1vtnc_ a.4.5.14 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  9...........................................ISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQN-SIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNM................................................................................................................................. 86
9 -5.170d5jsia_ f.13.1.0 (A:) automated matches {Candidatus actinomarina [TaxId: 1389454]}  ali model 3D-neighbors follow..  9  72WNEAVRNWGIAATVMIGAGYYGETSAAGSNEYWTGFVIAMATYVWLMR-LKGDQAVAFENIKNLILVGWIIYPLGYIAPVV---YTIADIINK.............................................................................................................................................................. 199
10 -5.150d5mu9a2 d.3.1.18 (A:156-293) automated matches {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}  ali model 3D-neighbors follow..  11  63.......................................................................FAIAMKAAVGKWGADSWKANGFAIFCGVMLGVNKAGDAAHAYNFTLTKDHADIVFFEPQNGGYLNDIGYD.............................................................................................................. 132
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.