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Query: d3ryce1 a.137.10.1 (E:5-145) Stathmin 4 {Norway rat (Rattus norvegicus) [TaxId: 10116]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DMEVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASRLast
1 -80.400d3ryce1 a.137.10.1 (E:5-145) Stathmin 4 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors  100  1DMEVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR 141
2 -6.410d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  214...........................................ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT............. 298
3 -6.090d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  8...........GSNSFHMVIARVVDGARVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCI----VGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARL............................. 113
4 -6.030d3mdqa1 c.55.1.0 (A:3-127) automated matches {Cytophaga hutchinsonii [TaxId: 269798]}  ali model 3D-neighbors follow..  11  9...........GTNTFHLLITDIVNDRAVGLGKGGITKGFITEEAMDRALDTLKKFRVILDEHAVVHVIA----TGTSAVRSGSNKQVLIDRIKKEVNIDVEVIDGAREAEL............................. 114
5 -5.610d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  11...........GSYSVRLTIAQIKDGKITSLGTKVKETGRLQEDRIEETIQVLKEYKKLIDEFKVERVKA----VATEAIRRAKNAEEFLERVKREVGLVVEVITPEQEGRY............................. 116
6 -5.510d3cera1 c.55.1.0 (A:14-142) automated matches {Bifidobacterium longum [TaxId: 206672]}  ali model 3D-neighbors follow..  15  11...........GTNSIRLKIARVDADGVIRLGQDVDKTHRFADEALERAYVAAREFAGVIAEHPIDGLRF----VATSATRDAENREEFEDEIERILGVRPEVIPGTEEADL............................. 117
7 -5.310d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}  ali model 3D-neighbors follow..  13  48...........................................KELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLRDADDLQKRLAVYQA... 143
8 -4.980d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  2.........................................EPKSVKEIFIEMKDTVELMVDLAYASLLFGDKEIAEEVLELEERIDLLNYQLMMHSVLAARNVKEAEQVQIANAIEDISNAAGDLAKM............ 93
9 -4.960d2jg6a_ a.96.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  10  32.FKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQY................... 152
10 -4.770d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  155...........GGHADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDTDHGIAVNPARQDLLDNLRAAGVALMTIEQLQQRAEQLTG---KPQPIEFTDRVVAVVRYRDGSVIDVIRQVK..................... 269

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 6 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.