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Query: d3up8a1 c.1.7.0 (A:1-275) automated matches {Sinorhizobium meliloti [TaxId: 266834]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHAVSSNGANIPALGFGTFRMSGAEVLRILPQALKLGFRHVDTAQIYGNEAEVGEAIQKSGIPRADVFLTTKVWVDNYRHDAFIASVDESLRKLRTDHVDLLLLHWPGSDVPMAERIGALNEVRNAGKVRHIGISNFNTTQMEEAARLSDAPIATNQVEYHPYLDQTKVLQTARRLGMSLTSYYAMANGKVPADPLLTEIGGRHGKTAAQVALRWLVQQQDVIVLSKTATEARLKENFAIFDFALTREEMAAVRELARPNGRIVNPQGLAPEWDALast
1 -118.000d3up8a1 c.1.7.0 (A:1-275) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors  100  1MHAVSSNGANIPALGFGTFRMSGAEVLRILPQALKLGFRHVDTAQIYGNEAEVGEAIQKSGIPRADVFLTTKVWVDNYRHDAFIASVDESLRKLRTDHVDLLLLHWPGSDVPMAERIGALNEVRNAGKVRHIGISNFNTTQMEEAARLSDAPIATNQVEYHPYLDQTKVLQTARRLGMSLTSYYAMANGKVPADPLLTEIGGRHGKTAAQVALRWLVQQQDVIVLSKTATEARLKENFAIFDFALTREEMAAVRELARPNGRIVNPQGLAPEWDA 275
2 -106.000d4giea1 c.1.7.0 (A:1-281) automated matches {Trypanosoma cruzi [TaxId: 353153]}  ali model 3D-neighbors follow..  32  7.CVTLHNSVRMPQLGLGVWRAQDAETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIRESGVPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKK-KFVDTWKALEKLYEEKKVRAIGVSNFEPHHLTELFKSCKIRPMVNQVELHPLFQQRTLREFCKQHNIAITAWSPLGSGEILKNHVLGEIAKKHNKSPAQVVIRWDI-QHGIVTIPKSTNKGRIQENFNVWDFKLTEEEMRQIDELNEDKRIGADPDNFFPGGE. 281
3 -106.000d1m9ha_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]}  ali model 3D-neighbors follow..  36  4.SIVLNDGNSIPQLGYGVYKVPPADTQRAVEEALEVGYRHIDTAAIYGNEEGVGAAIAASGIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLALDQVDLYLVHWPTPADNYVHAWEKMIELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVNQIELHPAYQQREITDWAAAHDVKIESWGPLGQGKLFGAEPVTAAAAAHGKTPAQAVLRWHL-QKGFVVFPGSVRREHLEENLDVFDFDLTDTEIAAIDAMDPGDGSGGHPDEVD..... 277
4 -101.000d2bgsa_ c.1.7.0 (A:) automated matches {Barley (Hordeum vulgare) [TaxId: 4513]}  ali model 3D-neighbors follow..  27  3.HFVLKSGHAMPAVGLGTWRAGSDTAHSVRTAITEAGYRHVDTAAEYGVEKEVGKGLKAAGIDRKDLFVTSKIWCTNLAPERVRPALENTLKDLQLDYIDLYHIHWPFREFDMEGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEMHPGWKNDKIFEACKKHGIHITAYSPLGSSELAHDPVVEKVANKLNKTPGQVLIKWAL-QRGTSVIPKSSKDERIKENIQVFGWEIPEEDFKVLCSIKDEKRVLTGEELFRDVWDH 306
5 -97.700d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  33  4.RILLNNGAKMPILGLGTWKSPPGQVTEAVKVAIDVGYRHIDCAHVYQNENEVGVAIQEQVVKREELFIVSKLWCTYHEKGLVKGACQKTLSDLKLDYLDLYLIHWPTGDTNILDTWAAMEELVDEGLVKAIGISNFNHLQVEMILNKPKYKPAVNQIECHPYLTQEKLIQYCQSKGIVVTAYSPLGSPSLLEDPRIKAIAAKHNKTTAQVLIRFPM-QRNLVVIPKSVTPERIAENFKVFDFELSSQDMTTLLSYNRNWRVCALL......... 302
6 -93.900d3vxga_ c.1.7.0 (A:) automated matches {Candida parapsilosis [TaxId: 5480]}  ali model 3D-neighbors follow..  31  7.TFRTKSGKEISILGTGTKWKQAQELVDNILLGLKLGFRHIDTAEAYNTQKEVGEALKRTDVPREDIWVTTKYSSIKAYSKSPSDSIDKALAQLGVDYVDLFLIHSPFFGYTLEQAWEALVEAKKAGKVREIGISNAAIPHLEKLFAASEYYPVVNQIEFHPFLQNKNIVRFCQEHGILVEAFSPLAPLTNALAETLKRLAEKYKKTEAQVLLRYTL-QRGILPVTTSSKESRLKESLNLFDFELTDEEVNEINKIGDANPYRAFFHEQFKDL.. 304
7 -93.100d5c7ha_ c.1.7.0 (A:) automated matches {Rhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  35  7.TIAFPDGRKVPALGQGTWRMGENDEVRSLQTGLDLGMTLIDTAEMYGDERIVGEAIKGR---RDEAFVVSKVLPSNASRAGTVAACERSLRNLGIDCVDLYLLHWRGG-YPLAETVAAFEELKKAGKIRAWGVSNFDVDDMEELSAVPDGGNAANQVLYNLARREFDLLPRCRAQGVPVMAYSPLDEGRLLHDADLIHIAKAHQATPAQVALAFLKTCSGVISIPKTGSPERARENRDAMDIHLTTENLAELDRHFPPPRRKTRLEVI...... 281
8 -91.800d4ijra_ c.1.7.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  31  10.YFSLNNGVRIPALGLGTANPHEKETKQAVKAAIKAGYRHIDTAWAYETEPFVGEAIKDGSIKREDLFITTKVWPVLW--DEVDRSLNESLKALGLEYVDLLLQHWPLCDGDYLETYKQLEKIYNDHRVRAIGVSNFSIEYLERLIKECRVKPTVNQVETHPHLPQMELRKFCFMHDILLTAYSPLGSHGNLKIPLVKKLAEKYNVTGNDLLISYHI-RQGTIVIPRSLNPVRISSSIEFAS--LTKDELQELNDFGEKYP.............. 303
9 -58.900d4r9oa_ c.1.7.1 (A:) automated matches {Salmonella enterica [TaxId: 99287]}  ali model 3D-neighbors follow..  26  9.....PQGPEFSRFVMGYWRLSARQLVSFIEEHLDLGVTTVDHADIYGCEAAFGEALTLAPHLREKLQIVTKCGHYITDRRHIILSAEQSLKNLATDYLDMLLIHRPDPLMDADDVAEAFQHLHQSGKVRHFGVSNFTPAQFTLLQSRLPFTLATNQVEISPVLLLDGTLDQLQQLRIRPMAWSCLGGGRLFNDQELSVIAQELASSIEQVVYAWILRLPSPLPIIGSGKIERVRAALEAETLSLTRQQWFRIRKAA.................. 292
10 -54.700d3n2ta_ c.1.7.0 (A:) automated matches {Gluconobacter oxydans [TaxId: 442]}  ali model 3D-neighbors follow..  24  10.....GIDTPLSRVALGTWAIDDDNGVRTIHAALDEGINLIDTAPVYGSEEIVGRALAE---KPNKAHVATKL-FRDSRPARIRKEVEDSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQDGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFERTIEKDILPYAEKHNAVVLAYGALCRGLLTGKDEFEKLAEKRGKSVMAFAVRWVLDQGPVIALWGARKPGQVSGVKDVFGWSLTDEEKKAVDDI................... 312
11 -54.000d1pyfa1 c.1.7.1 (A:2-310) Putative oxidoreductase IolS {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  26  7.....KSDLQVFPIGLGTNNLNEETGKELVREAIRNGVTMLDTAYIYGSEELIGEVLR--EFNREDVVIATKAAVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLEQLKEANKDGLVDVLQGEYNLLNREAEKTFFPYTKEHNISFIPYFPLVSGLLAGKNKLAPIAEKHNVDIPHIVLAWYLARPEIILIPGAKRADQLIDNIKTADVTLSQEDISFIDKL................... 307
12 -52.500d3v0sa1 c.1.7.0 (A:1-305) automated matches {Rauvolfia serpentina [TaxId: 4060]}  ali model 3D-neighbors follow..  22  8.....TQGLEVSKLGFGCMGLPEEQGIAVIKEAFNCGITFFDTSDIYGNEELLGKALK--QLPREKIQVGTKF-KAKGTPDYVRSCCEASLKRLDVDYIDLFYIHRIDTTVPIEITMGELKKLVEEGKIKYVGLSEASPDTIRRAHAVHPVTALQIEYSLWTRDIEDEIVPLCRQLGIGIVPYSPIGRGLFWGKYRIEALSQKHGCTPVQLALAWVLHQGEVVPIPGTTKIKNLHNNVGALKVKLTKEDLKEI...................... 305
13 -51.500d1ynpa1 c.1.7.0 (A:1-297) automated matches {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  25  8.....TSDLHVSELGFGCMSLDETKARRIMDEVLELGINYLDTADLYNNEQFVGKALKG---RRQDIILATKVGNRDPSKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDDPIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSI----RPEEWFPLIQEHGVSVVVRGPVARGLLYDELKLLRESLPTDRPLHELALQYCLAHDVVTVAAGASSIDQVKANVQAVEAPLTAEERQHIQKL................... 286
14 -49.100d1zsxa1 c.1.7.1 (A:25-345) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  6.....KSGLRVSCLGLGTWQITDEMAEQLMTLAYDNGINLFDTAEVYAAEVVLGNIIKKKGWRRSSLVITTKIFERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARTPPICEQAEYHMFQREVQLPELFHKIGVGAMTWSPLACGIVSGKKELQAIAERLGCTLPQLAIAWCLRNEGVSVLLGASNADQLMENIGAIQVKLSSSIIHEIDSI................... 316
15 -48.400d1gvea_ c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  21  1.........ARPATVLGAMRMDVTSSSASVRAFLQRGHTEIDTAFVYASETILGDLGLGLGRSGCKVKIATKAAGKTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSNYVSWEVAEICTLCKIMPTVYQGMYNAITRETELFPCLRHFGLRFYAFNPLAGGLLTGRKALKTTYGPTAPSMISAAVRWMYHHSQLAVILGMSSLEQLEQNLALVE-PLEPAVVDAFDQA................... 311
16 -47.500d3n6qa_ c.1.7.0 (A:) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  26  19.....KSGLRLPALSLGLWVNALESQRAILRKAFDLGITHFDLANNYGAEENFGRLLREDAAYRDELIISTKAGGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLRIPLLIHQPSYNLLVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKRLLNEMAQQRGQSMAQMALSWLLKDDRVSVLIGASRAEQLEENVQALNLTFSTKELAQIDQH................... 330
17 -46.500d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  8.....HSSLEVSTLGLGTMQNSEADAHAQLDYAVAQGINLIDVAEMYPTETYVGNWLAKHG-SREKLIIASKVSDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSEVGLAEVSQYEGVELLAYSCLGFGTLTGKAAYVDIARRHGLDPAQMALAFVRRQPFVATLLGATTMDQLKTNIESLHLELSEDVLAEIEAVHQ................. 339

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.