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Query: d4cvka2 c.72.2.0 (A:101-319) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPLast
1 -102.000d4cvka2 c.72.2.0 (A:101-319) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors  100  1TGPLAAMTGSSGKTTVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQP 219
2 -44.100d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  4NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAKVIPTENTTGSAVDVQHELAGLDQGATFCAMEVSSHGLVQ-HRVAALK--AASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHC-GQAIINADDEVGRRWLAKLPDAVAVS-NPNCHGRWLKATEVNYHDSG-ATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQP 234
3 -42.300d2x5oa2 c.72.2.1 (A:94-297) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  26  10QAPIVAITGSNGKSTVTTLVGEMAKA----AGVNVGVGGN----IGLPALML-LDDECELYVLELSSFQLETTSSL----QAVAATILNVTEDHMDRYFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRG--ADERCVSFGVNMGDYHLNHQQ------GETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT. 204
4 -40.100d3eaga2 c.72.2.0 (A:93-323) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  24  16....LGVAGTHGKTTTASMLAWVLEYAGLAPGFLI---GGVPENFGVSARLPQTPRQSPFFVIEADEYDTAFFDKRSKFVRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFG---TEHGWQAGEANADG----SFDVLLDGKTARVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFK. 227
5 -39.900d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  27  15....IAVAGTHGKTTTTAMISMIYTQAKLDPTFVN---GGLVKSAGKNAHL----GASRYLIAE-----ADESDASFLHLQPMVSVVTNMEPDHMDTYGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVG-RQVITYGFS-EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQ. 215
6 -37.400d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  17....FAVTGTDGKTTTTAMVAHVLKHLRKSPTVFL---GGIMDSLEHGNYE----KGNGPVVYE-----LDESEEFFSEFSPNYLIITNARGDHLENYG--NSLTRYRSAFEKISRNTDLVVTFAEDELTSHL-------GDVTFGVK--KGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFR. 207
7 -22.700d1o5za2 c.72.2.2 (A:1-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  39EYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPH-TFRERIRL-VTAMAFEKNVDIAVLEVGL---GGRLDATNVVFPLCSTIVTVDRDHEKTLGTIEQIAWEKSGI---IKERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHEN---RFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLSEKAIREGLKNAK. 291
8 -21.600d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}  ali model 3D-neighbors follow..  20  38QGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPF-RFNERIMI-ITALGYQRQVDVAVIEVGI---GGDTDSTNVITPVVSVLTEVALDHQKLLGTITAIAKHKAGIIK--RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR---DFSVPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYPLTPQNIRQGLAASH. 296
9 -8.990d1nksa_ c.37.1.1 (A:) Adenylate kinase {Sulfolobus acidocaldarius [TaxId: 2285]}  ali model 3D-neighbors follow..  15  1.MKIGIVTGGVGKSTVLAKVKEILDNQGINNKIINYGDLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFID----THAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRN.............................................................................. 140
10 -8.420d1khta_ c.37.1.1 (A:) Adenylate kinase {Methanococcus voltae [TaxId: 2188]}  ali model 3D-neighbors follow..  10  2..KVVVVTGGVGSTTSSQLAMDNLRKEGVNY-KMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESPVAVD----THSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRV.............................................................................. 137

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.