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Query: d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQYLast
1 -106.000d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors  100  1VQTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY 236
2 -88.800d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  25  1.KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASDKYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVV--PKDSDIKSYNDIAGHSTQVVQGNTTVPMLQKFNKNHENNVKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDLKVIDLPSDQKPVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYLPDK. 234
3 -87.400d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  13.KSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKY-GITVNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVT--KKSSGITTAKDMTGKTLGAQAGSSGYADFEANPEILKNIVKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVDYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVATK.. 246
4 -87.200d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  20  6.DVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQ-GFKLKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSN-LTIATSSTDDSIKSWKDLKGKTLGAKNGTASFDYLNAHAKEYGYT---VKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQ-KFATPIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESDA..... 230
5 -86.600d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  26  12.GEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERL-GLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVS---RKGGPRTAKDLQGKVVGVQVGTTYMEAAQKIPGI-----KEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKENTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK.. 236
6 -86.500d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  18  5ARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEM-QAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVV--TRKGAYHTFADLKGKKVGLENGTTHQRYLQDKQQA-----ITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPMDERASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT........ 228
7 -85.800d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  18  1.EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKL-GKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKH-LVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSE------VHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN...... 224
8 -85.700d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  26  10.GKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRL-GLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVARKYGAK-----EVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLTIHPDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSKK. 242
9 -85.600d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  22  3PQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRM-QVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSR-LIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKG---VDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD.. 238
10 -85.200d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  28  14.GTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKL-GVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVA--HNDSNIKSIADIKGVKTAQSLTSNYGEKAKAAGAQ-------LVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNNAGVKIVWSAPADEKSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ.. 240
11 -85.000d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  23  1..TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRA-GLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG------ADLSGI-VAAQTATIQAGYIAESGAT-------LVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAA.... 216
12 -84.300d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  15  5.RTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSR-HCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSIGYPRGMAYSDLIKNDLEPKGYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM......... 228
13 -84.000d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  27  9.GYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRL-GVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFRPKTYEDLVGKTVAVQIGTTGDIEVSKYDG------IKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNP-DLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS........ 226
14 -83.600d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  19  2.GELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAM-GVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPTLVTKFGVSAEYAAKRLFKN-----AKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK. 232
15 -82.700d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  27  1.KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGA-GWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLA-AMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKP-----KEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGGRVKVAGAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSE...... 221
16 -82.300d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  22  8.GKLVVALNPDFAPFEYVDGKNQIVGSDIELAKAIATEL-GVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLAQKKVGAQKGSIQETMAKDLLQN-----SSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPD-ADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASIEK... 238
17 -81.800d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  22  1SLNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRL-HATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYIT--TVDSKISTFDDLHGKKIGVRKGTPYARQVLSENRN-----NQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF......... 228
18 -81.700d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  19  5.RTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVM-GMTVEFRLGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHA-IFARRDSPPAAGLEDLRGRKVALHRDGIMHEYLAERGYG-----KDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVL...... 226
19 -81.600d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  25  10.TTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLG--QVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLT---SEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAG-----TDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPAAY 238
20 -81.000d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  25  2.KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRM-NIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPELDKFTKIFEGVKFGVQAGTSHEAFMKQMMPS-----VQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNK-PRMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDASP... 254
21 -78.400d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  21  5.KKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAA-GLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILV--KQGSPVKNALDLKGKTIGVQNATTGQEAAEKLFGKG----PHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPLQVIEDPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLDR. 232
22 -76.400d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  17  6.ITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKM-GFVADVQNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM--RKGTLIDGMDDLKYNRIGIRIGTAGEDYYLREISGGSRN---FYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKACP... 246
23 -75.400d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  21  1..PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGDIRSIDDLPGKVVATTAGSTAATYLREHHIS-------VLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGGKVEIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD........ 219
24 -74.800d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  17  11.GVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAV--PKDSNITSVEDLKDKTLLLNKGTTADAYFTQNYPN-----IKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDD.. 238
25 -74.500d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  19  11.GELKVGTTGDWDPMAMKDATNKYKGFDIDVMQELAKDM-GVKITFVPTEWKTIVSGITAGRYDIST-SVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKKYSTWKSLNNKTIATTLGTSQEEKAKEFFPL-----SKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL..... 236
26 -74.300d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  21  11.NEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKIDNGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLV--KKGSQIKSVDDLNASTVLAVKGSTSAANIRQHAPD-----AKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENP-EYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETEGK.. 239
27 -73.900d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  15  1...LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFYQAD-------VRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPLNLEVTEIRVSLEPYGFVLKENS-PLQKTINVEMLNLLYSRVIAEFTERWLG........ 221
28 -71.800d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  11.GVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESL-GAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDGVTAIVNPGGTNEKFARANLKK-----ARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPLCAVHPQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL......... 232
29 -70.200d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  12  11QGFARIAIA-NEPPFTAVGADGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPKSYKDIADNPDAKIGAPGGGTEEKLALEAGVPR----DRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAMS. 246
30 -69.300d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  18  10.GQLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSIDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLV--LKEKKYKSLADMKGANIGVAQAATTKKAIGEAAKKIGIDVK-FSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDD---KSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG......... 230
31 -53.800d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  47.LFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDM-NFDFDLKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS-LGILVRTRGTELSGIHDPKLHRFGTVRESSAEDYVRQSFPEMHEYMR-RYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADKLLTVGKPFAIEGYGIGLPPNS-PLTSNISELISQYKSHGFMDVLHDKWYKVV...... 288
32 -48.900d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  16  16.PVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRT-GLDFEIIGVTVEELIAKLRSGEADMA-GALFVNSARESFLSFSRPYVRN-GMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQ-----AKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAKLRIASADLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW.......... 234
33 -42.300d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  45...............EGMNVKKCCKGFCIDILKKLSRTV-KFTYDLYLVTWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVT-RPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTR-FNQRGVEDALVSLKTGKLDAFIYDAAVLNYKARDEGCKLVTIGSGFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTGI...... 277
34 -37.900d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  14  4.RHLRLGSVEE-QPFMFFATNDCWSGMVNDMVVKLSEDL-GFTYEYIQPEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFP-FMDAGIKAVVKGEGTTLNQVLELLDQKWGVIGSRHPETLLKTHRDSRYSRLVDEGVELKDLNHAIETLRGGLFVFIDEGPVLAHNLIS-DCDVFSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWS......... 245
35 -34.800d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  9  54.................HTVPQCCYGFCIDLLIKLARTM-NFTYEVHLVAWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ-KCDLVTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQ...... 285
36 -32.600d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  11  2..RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQEC-KFDFNFEPVRWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTGSLHDLVDQNKVQFGTIRGGATSVYFSERMAWNKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNAD-FRSNLSVGILRLSERGELFKLRNKWFNS....... 255
37 -32.200d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  3.VVLRVVT----EPFVMVSEPKKYQGFSIDVLDALSNYL-GFNYEIYVATWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSP-YRDVFSQRILELQQSGDMDILKHKWWPKN...... 260
38 -32.000d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  2.KTVVVTT----SPYVMMKKNERYEGYCVDLAAEIAKHC-GFKYKLTIVGWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWW......... 253
39 -17.600d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  9  30..............................LASGLKAQFDGIPFYYAHMR-DIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLI--------CRKGESGNVKRVGLDSRSADQKIMTDVFFGDSD---VERVDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQEAVVLTRVDDYPMQQLLRAVVDAHQQRVVSGEQEPSY.......... 228
40 -14.200d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  13  1TGRLNIAVLPTIAPYLL------------RVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLEDDLLYYEEFLGYVSRCEPLFEQDVI-RTTEVNPHRWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYEQLIGLLRSAVPSDMHKLQTGQ............... 216
41 -13.200d5b7ha1 c.94.1.0 (A:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}  ali model 3D-neighbors follow..  9  12QGQLKLGCIPTIAPFLL------------DLVQEINQRFPQLNLLLREDTTTNLLTALRHGELDVLILALPVEIDGMESRVVGQDPFKMVISRHQAGAIKVPI-KYDDLPDESFLLEKEHSLTEHAVSACKLTDKEKINPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSSKTFNQLAEVVSEL....................... 215
42 -12.900d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  4SGPLHIGLIPTVGPYLL------------HIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFIEVPLFDEPMLLAIYEDHPWANREAV-PMADLAGEKLMLEDGHCLRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAG-SGITLLPALAVPPERKRDGVVYLPAIKPEPRRTIGLVYRPGSEQLAEAIRARMDGHFD..................... 212
43 -11.300d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  3.EFITIGSGST---------TGVYFPVATGIAKLVNDANVGIRANARSTGGS--INAINAGEFEMALAQNDIAFEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVDVGSGTEQNARQILEAYGLTFDDLGQAISASQGIQLMQDKRADALFYTVGLGASAIQQLALTTPIALVAVDLNRI--------QAIAKKYPFYVGFNIPGGTYKGVDVT........... 224
44 -11.100d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  5SGVLTIATTHTQARYSL------------EVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQ----LVAFPWFRWHHSLLVPHDQISPLTLESIAKWPITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQ--EEENLIRLDTRHLFDANTVWLGLKR-GQLQRNYVWRFLELCNAGLSVEDIKRQ........... 216
45 -11.000d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  8  5.ANIKLGY-VEAAPLIIAQEKGFFAKYGMTGVEVS-----------KQANWASARDNVTIGSQGGGIDGVLAQLITQGNGIAVAPMHEGKGVNLDITKAADYIKGFNKTNGRKFKAAHNVNQDFWIRYWFAAGGVDPDTDIDLLAVPETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYL-DKNPKATKALLKGIME----------AQQWIDDPKNRPE. 255
46 -10.800d2y7pa1 c.94.1.1 (A:90-301) automated matches {Burkholderia sp. [TaxId: 233098]}  ali model 3D-neighbors follow..  13  25.............................PLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFQRRLFRHRY------VCMFRKDHPSAKSPMSLKQEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRC---EVPFGLTTSPHPAKLPDIAINLKYNRDPGNMWLRQLFVELFSEA................... 212
47 -10.600d4rpoa_ c.94.1.0 (A:) automated matches {Sphingobium chlorophenolicum [TaxId: 46429]}  ali model 3D-neighbors follow..  10  26.............................RLYATLEETAPQVRVTGVNLRHGPLVEELESGSIDIAFGGFPTLSAGKTQTLFREEYVCVMRQSHPALTHGLDLEAFRQCRHIIVTAHEFNHVHEQVEARLLELLPPESIRFTTENFLVSAVIAEETDVILTIPSRLARWF---ANRGGLTIFPVPIELPSIEVKQRYDKDPGNIWLRRVIAKIGFQNPPAE............... 219
48 -10.500d3jv9a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  10  2.GAFKLGLIFTVAPYLL------------KLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPLYDEPFFVIVPKGHSFEELDAV-SPRMLGEEQVGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTE-NDHMLFSIIPFEGTPPSRRVVLAYRRNFPKALSAMKAAIMQSQLHG................... 211
49 -10.400d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}  ali model 3D-neighbors follow..  10  6.GSLYVATTHTQARYAL------------GVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDD----LVMLPCYHWNRSIVVTPETKGSVSIEELAQYPVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP--VSDPDLVKLDANGIFSHSTTKIGFRR-STFLRSYMYDFIQRFAPHLTRDVVDTA........... 216
50 -10.300d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}  ali model 3D-neighbors follow..  11  2.....................GELVAY--LLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTC-KLADLRAVELTLGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVA---AIRWPDIAFARIVGTRVKVPISCIFRKEKQPILARFVEHVRRSAKD.................... 205
51 -10.200d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  9  25.............................PLMNRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEG--IQAHDWFADRYVVVARRDHPRLAGAPTLEGRHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTDFLLTAPRHAARAL---AEAAGLALYPAPFDIPPYVLRLQHVGRDAHAWMIGQLKGL....................... 211
52 -9.800d4p56a_ c.94.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  12  1...VELTLSSWLPPTHAVVADF-LMPWGEEIRKATDGRVTLRLLPKAVTNPAGHFDAVRDGLVDVTFVSHAYYPGRFQLTKFAVLPFSGDTATSRAFTTSKPVKQIGDFQGLKIRVGGGMAADVA---------KAVGASPIAKPAPESYELLSTGVADGVFFPESLVSFKLDSIIRHATEFPGGLYSDTHAVIINRDAARLSKQDQDTLVRLSGRHLAELAGRAWDTHDAAARK. 257
53 -9.450d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  15  5.EYILIGTGSM---------TGVYYPIGGSICRFIASDYNKIICSISSTTGS--LNSIRYSNMDIAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSSNISVIDDIKGKRVNISPGTGVRVAMLKLLGEKGWTKKDFSVMAKSSEQAQALCDNKIDVMVDVIGHPNASIQEASATCDIKFIPLDDRLI--------DDLHAKYPYYQKDIISGGLYND............... 224
54 -9.080d3oxna_ c.94.1.0 (A:) automated matches {Vibrio parahaemolyticus [TaxId: 670]}  ali model 3D-neighbors follow..  10  23.............................FALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPRSEILGRVGVLCLLSKQHPLANQEMSLDDY--LSHPHAMIAISDGVKALIEQALIDKPQR-KMVLRAYHLEAALAIVDTLPIIITVPADLAYLV---AERYDLVVKPLPFQFTPFDYSMSPAQEWLRSVVREECSRLIAK.................... 212
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.