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Query: d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ARLKGITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAPPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTKACPLast
1 -115.000d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors  100  1ARLKGITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAPPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKNGKIPYNRIGIRIGTAGEDYYLREISGGSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTKACP 246
2 -87.000d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  19  1ATPKKDVYTIASDNSFAPFEFQN-------DDKQFTGIDVDLLNAIAKNQGFKLKWN----FIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDIKSWKDLK-----GKTLGAKNGTASFDYLNAHAKEYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQ-KFATPIKPIPDGQYGFAVKKGSELIEMFNNGLANLRANGEYDKIIDKYLESDA.. 230
3 -86.400d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  16  1ASVSARTLHFGTSATYAPYEFVD-------ADNKIVGFDIDVANAVCKEMQAECSFT----NQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGAYHTFADLK-----GKKVGLENGTTHQRYLQDKQQ--AITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDDERASDPDYYGKGLGIAVRKDNALLQEINAALDKVKASPEYAQMQEKWFT..... 228
4 -84.200d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  22  1.....KELVVGTDTSFMPFEFKQ--------GDKYVGFDLDLWAEIAKGAGWTYKIQ----PMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTIKSIDDLN-----GKVIAAKTGTATIDWIKAHLK--PKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSEP.. 222
5 -83.900d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  2..VEGRTLNVAVSPASPPMLFKS-------ADGKLQGIDLELFSSYCQSRHCKLNIT----EYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKLNNLNELN-----KYSIGYPRGMAYSDLIKNDLEPKGSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMK..... 229
6 -82.600d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  19  8KYQSNKSITIGFDSTFVPMGFAQ-------KDGSYAGFDIDLATAVFEKYGITVNWQ----PIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSGITTAKDMT-----GKTLGAQAGSSGYADFEANPEIANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGNDYNVFTVGLETEAFAVGSRKEDTLVKKINEAFSSLYKDGKFQEISQKWFGEDVAT 245
7 -82.100d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  19  1.GATKKKVVVGTDAAFAPFEYMQ--------KGKIVGFDVDLLDAVMKAAGLDYELK----NIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDLK-----GKTIGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGKEP.. 228
8 -82.100d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  21  1....SLNLTIGTSKFNPPFEVWS------GNNSSLYGFDIDLMQEICRRLHATCTFE----AYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKISTFDDLH-----GKKIGVRKGTPYARQVLSENR--NNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKGEGYSIMANPDQVLIKKINKILLEMEADGTYLRLYSEYF...... 228
9 -81.600d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17  1..ALPQTVRIGTDTTYAPFSSKD-------AKGEFIGFDIDLGNEMCKRMQVKCTW----VASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLE----SLKGKHVGVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAG-SVKDKKYFGDGTGVGLRKDDELKAAFDKALTELRQDGTYDKMAKKYFDFNV.. 235
10 -80.900d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  19  1......TVRMGTEGAYPPYNFIN-------DAGEVDGFERELGDELCKRAGLTCEW----VKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG----ADLSG------IVAAQTATIQAGYIAES----GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDPLGGGVGMGLRESDELRGKFDAAITSMKEDGTLNTMIKKWFGEDAA. 216
11 -80.600d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  21  7EIKRSGEIRIGTEGAFPPFNYFD-------ERNQLTGFEVDLGNAIAERLGLKPRW----IAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG-PRTAKDLQ-----GKVVGVQVGTTYMEAAQKIPG--IKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKENTLQVGELVFQERVAMAVAKGNSLLDALNRALAELMQDGTYARISQKWFGEDVRC 235
12 -80.000d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  18  1.....EKFIVGTNATYPPFEFVD-------KRGEVVGFDIDLAREISNKLGKTLDVR----EFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLFKGENKHPLPLTQ-----YRSVAVQTGTYQEAYLQSL---SEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPAATIDLPEDQWVLGYGIGVASDRALALKIEAAVQEIRKEGVLAELEQKWGLNN... 224
13 -79.600d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  21  1......PLLVATR-VIPPFVLSN--------KGELSGFSIDLWRSIATQIGIESKL----EYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESIRSIDDLP-----GKVVATTAGSTAATYLREH----HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFD..... 219
14 -79.500d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  21  5GLIDPTTISVGTMGDAKPYAFTT-------ADGNFTGFDIELFLNVAGRLGFKKE-QVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG-ITDAAGLK-----GKRLGVVQGTLQEIYAEKNFA--GTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMP 235
15 -79.000d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  18  1....RGELRVGLEPGYLPFEMKD-------KKGNVIGFDVDLAREMAKAMGVKLKL----VPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEVKSYKDLDKPEL---TLVTKFGVSAEYAAKRLFK--NAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQYLVHLDTSLTYEPLGWAIKKGDDFLNWLNHFLAQIKHDGSYDELYERWFVDTK.. 228
16 -78.700d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  16  3AIKSKGKLVVALNPDFAPFEYQKVV----DGKNQIVGSDIELAKAIATELGVELELS----PMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDTYQSVNDLA-----QKKVGAQKGSIQETMAKDLLQ--NSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPD-ADLNFEKEQDDSYAVAMKKDSELKEAVDKTIQKLKESGELDKLIEDAFKASI.. 236
17 -78.600d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  20  4EIKSRGYLLVGLSADFPPFEFVD-------ENGNIVGFDVDLAKEIARRLGVELKIV----DMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDPKTYEDLV-----GKTVAVQIGTTGDIEVSKY---DGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNP-DLVISSGVLSSEQYGIAVRKEDDLLEFINSVLRELK-KSPYDVLIEKWFS..... 226
18 -78.200d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  19  2.....KSITIATEGSYAPYNFKD-------AGGKLIGFDIDLGNDLCKRMNIECKF----VEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLKAELDKFTKIFEGVKFGVQAGTSHEAFMKQMMP--SVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPNKDLKMFGPRMTGKGVGVGIRKEDDLKALFDKAIDAAIADGTVQKLSQQWFGYDASP 254
19 -77.800d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  13  9RINNKGTVTVGTEGTYAPFTYHD-------KDGKLTGYDVEVTRAVAEKLGVKVEFK----ETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIK-----GVKTAQSLTSNYGEKAKAA----GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNGVKIVWSAPADEGSGLIVNKGNEAVAKFSTAINELKADGTLKKLGEQFFGKDIS. 238
20 -76.900d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  17  3...RHRTIVVGGDRDYPPYEFID-------QNGKPAGYNVELTRAIAEVMGMTVEFR----LGAWSEMFSALKSGRVDV-LQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPAAGLEDLR-----GRKVALHRDGIMHEYLAER--GYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRTNLVPVARSIAAQRYGYAVRQGDELLARFSEGLAILRKTGQYEAIRAKWLGVLE-P 228
21 -76.900d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  5QIKDKGKIVVATSGTLYPTSYHD----TDSGSDKLTGYEVEVVREAAKRLGLKVEFK----EMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDSGIKTLKDLK-----GKKAAGAATTVYMEVARKY--GAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLTIHPDIKYMPNKQALVMKKSNALQKKMNEALKEMSKDGSLTKLSKQFFNKA... 237
22 -76.500d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  18  1.......LKVGVVG-NPPFVFYG-----EGKNAAFTGISLDVWRAVAESQKWNSEY----RQNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATFRSVGDLK-----NKEVAVVRDTTAVDWANFY----QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG..... 221
23 -76.400d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  17  2.....QTITVGTGTQFPNVCFLD-------ENGKLTGYDVELVKEIDKRLGYKFKFK----TMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTDSNNSINSTKDLA-----GKRVITSATSNGALVLKKINEEQGNNAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDEKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSK 233
24 -75.700d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  16  1.....KTVTLATVGTTNPFSY--------EKKGKLTGYDIEVAKEVFKASD---KYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSDIKSYNDIA-----GHSTQVVQGNTTVPMLQKFNKNHENNNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGDNLKVIDLPSQKPYVYFIFAQDQDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYLP 232
25 -75.400d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  18  6RSKSTNEIIWGVKYDTRLFGMMD------IESRTVQGFDVDIAKAITKKILGD-NGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQIKSVDDLNAS----TTVLAVKGSTSAANIRQHAP--DAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENP-EYELVGGTFTNEPYGIAINKGQNFLKAVNQALEEMHADGTYDKIYQKWFPNETEG 238
26 -72.300d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  6RILESGVLRVATTGDYKPFSYRT-------EEGGYAGFDVDMAQRLAESLGAKLVV----VPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEE-ARFQTLEQIDQPGVTAIVNPGGTNEKFARANLK--KARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPECAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL...... 232
27 -71.800d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  18  6QILSSGELKVGTTGDWDPMAMKD------PATNKYKGFDIDVMQELAKDMGVKITF----VPTEWKTIVSGITAGRYDISTS-VTKTPKRAEVAGFTDSYYKYGTVPLVLKKNKYSTWKSLNNKDV---TIATTLGTSQEEKAKEFFP--LSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAFLAMMVSKNDQWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL.. 236
28 -71.100d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  21  42SMLDRLFSSLHSSNDTVPIKF----------KKCCYGYCIDLLEQLAEDMNFDFDLYIVGKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHHPSQRFGTVRESSAEDYVRQSFPEEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDDCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVPC. 290
29 -71.000d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  15  6KIKQNGVVRIGVFGDKPPFGYVD-------EKGNNQGYDIALAKRIAKELFGD-ENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLK-----DKTLLLNKGTTADAYFTQNYP--NIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDELKEFIDNLIIKLGQEQFFHKAYDETLKAH... 234
30 -68.000d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  5SIKSKGQLIVGVKNDVPHYALLD------QATGEIKGFEVDVAKLLAKSILGD-DKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMK-----GANIGVAQAATTKKAIGEAAKKIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDD---KSEILPDSFEPQSYGIVTKKDDAFAKYVDDFVKEH--KNEIDALAKKWG...... 230
31 -66.900d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  19IDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYRFGTVPNGSTERNIRNNYPYMHQYMTRFRGVEDALVSLKTGKLDAFIYDAAVLNYKARDEGCKLVTIGSGFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGI... 277
32 -66.000d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  16  7ELKEQGFARIAI-ANEPPFTAVG-------ADGKVSGAAPDVAREIFKRLGVA---DVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEA-GVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDNVEVLAPVEGAPVYGAAFRKGDALRDAFDVELAKLKESGEFAKIIEPYGFSA... 241
33 -57.700d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  3.......LKIVTIHQEPFVYVKPTMSDGTTVPQCCYGFCIDLLIKLARTMNFTYEVHLVANKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVERHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQ-KCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECD 288
34 -56.700d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  19  1..LIGRHLRLGSVEEQP---FMFFATEGCEGNDCWSGMVNDMVVKLSEDLGFTYEYIQPDTTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGGTTLNQVLELLDQD--KYKWGVIGSRHPETLLKTHRDSRYSRLVDEGVELKDLNHTLRGGLFVFIDEGPVLAHNLIS-DCDVFSVGEEFQSFEYAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWSS..... 246
35 -56.300d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  24  2......RYTVATRVGKPYFSWREEPEGVHEGNERFEGYAVDLIYMLAQECKFDFNFEPVRNTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKV-QFGTIRGGATSVYFSESNDTDNRMAWNKMKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNS.... 255
36 -54.900d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  1....NKTVVVTTILESP-YVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGT-LDSGSTKEFFRRSKIASAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK... 256
37 -53.300d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  1...GGVVLRVVTVLEEP---FVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN... 260
38 -46.900d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  16  13..ADHPVVKVAVLNLFAPFTLFR-------TDEQFGGISAAVLQLLQLRTGLDFEIIGV---DTVEELIAKLRSGEADM-AGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDPVDADHLD-----GRTVALVRNSAAIPLLQRRYP--QAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFGKLRIASADLPPAEIALATTRGQTLMSILNKALYSISND-ELASIISRW....... 234
39 -17.800d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  13  33...........................................GLKAQFDGIPFYYAHM---RGADIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKGESGN-----------VKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQEAVVLTRVDDYPMQQL---LRAVVDKHALLAHQQRVVSGEQEP 226
40 -13.600d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  12  1....TGRLNIAVLPTIAPY----------------------LPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLE----DDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRL-LDEGHCFRDQLVRFCQMKGLHERQTAGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRS.................. 203
41 -13.200d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  4....SGPLHIGLIPTVGPYLL-------------------HIIPMLHQTF----KLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFI----EVPLFDEPMLLAIYEDHPWANREAVPMADLAGEKL-LEDGHCLRDQAMGFCFEAGADEDT-ATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRA.................. 205
42 -12.500d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  1TNDTSGVLTIATTHTQARY----------------------LPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLV---AFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPITYRQGITGRSRIDDAFARKGLDIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLD-TRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDIKRQ........ 216
43 -12.100d5b7ha1 c.94.1.0 (A:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}  ali model 3D-neighbors follow..  12  8GDSMQGQLKLGCIPTIAPFLL-------------------DLVQEINQRF----QLNLLLREDTTTNLLTALRHGELDVLILALPVEIDGME----SRVVGQDPFKMVISRHQAGAIKVPIKYDDLPDESV-LEKEHSLTEHAVSACKLTDKEPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSSRSKTFNQLAEVVSE.................. 214
44 -11.500d3jv9a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  11  1....EGAFKLGLIFTVAPY----------------------LPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIV----TEPLYDEPFFVIVPKGHSFEELDAVSPRMLGEEQV-LTEGNCMRDQVLSSCSELAAKQRIQGSSINTIRHMVASGLAISVLPATALTE-NDHMLFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQ.................. 206
45 -11.400d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}  ali model 3D-neighbors follow..  9  1TWPDKGSLYVATTHTQARY----------------------LPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLV---MLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPVTYTFGFTGRSELDTAFNRAGLRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDANGIFSHST-TKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDTA........ 216
46 -9.850d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  14  1.SLNREYILIGT----------------GSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGS--LNSIRYSNMDISIVQSDLEMLPMDNLRMLASLHKEYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI--------------------------GHPNASIQEASATCDIKFIPLDDR-LIDDLHAKYYQKDIIS 218
47 -9.650d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  10  9...............................SGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVINAINAGEFEMALAQNDIAGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYLTFDDLGQAIRVSASQGIQLMQDKRADALFYTV--------------------------GLGASAIQQLALTTPIALVAVDLN-RIQAIAKKFYVGFNIP 214
48 -9.300d4p56a_ c.94.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  14  24..........................................GEEIRKATDGRVTLRLLPKAV--AGHFDAVRDGLVDVTFVSHAYYPGRFQLTKFAV-IYAHGPGIAFTTSKPVKQIGDFQGLK-------IRVGGGMAADVAKAVGASPIAK----PAPESYELLSTGVADGVFFPAESLVSFLDSIIRHATEFPGGLYSDTHAVIINRDARLSKQDQDTLVRLSGRHLAELAGRAW....... 248
49 -9.070d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  9  9...................................LGY-IPIVEAIAQEKGFFAKYGMTGVEVNWASARDNVTIGSQGGGIDGGQWTNGNKVPMYVLAQLITQGNGIAVKAADYIKGFNKTNGRKF---KAAHTFPNVNQDFWIRYWPDTDIDLLAVPP-AETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLK.................. 238
50 -9.030d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]}  ali model 3D-neighbors follow..  11  1.............................SNDSGIVVYN-SWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDAVTQAQVISEAELPKSIMDLAKPEWKGR-VSAMLELKGEKATLEWLKAMKTNFTAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQ-GGGVLASSKHPKEAQEFVKWITGKSGQDILRTN........ 263
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.