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Query: d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICHALast
1 -140.000d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors  100  1NHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICHA 280
2 -104.000d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  33  1TRLKIVTIHQEPFVYVKPTMSDGTGDPVKKVICTGPNDTSPG-SPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQEKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNP-SDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEA--SQKCDLVTTG--ELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRQECDS 289
3 -96.000d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  37  3LHLRVVTLIEHPFVFTREVDDEGLMTNDSSMLDRLFSSLSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDP--KLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGK--PFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKVVC.. 290
4 -89.100d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  30  3VVLRVVTVLEEPFVMVSE--------------------------NVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQGNYAFVWDAAVLEYVAINDPDCSFYTVGN--TVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN... 260
5 -87.300d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  25  4RHLRLGSVEEQPFMFFAT--------------------------EGCEGNDCWSGMVNDMVVKLSEDLGFTYEYIQPDDRKFGALNTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGEGTTLNQVL-----ELLDQDKYKWGVIGSRHPETLLKTHRDSRYSRLVDEGVEKDLNHAIETLRGGLFVFIDEGPVLAHNL--ISDCDVFSVG--EEFQSFEYAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWSSG.... 247
6 -85.700d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  22  2.RYTVATRVGKPYFSWRE----------------------EPEGVHYEGNERFEGYAVDLIYMLAQECKFDFNFEPVRDNKYGSYDTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVD------QNKVQFGTIRGGATSVYFSESNDTDNRMADAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYV--QRNCELTQIGE--SFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFNS.... 255
7 -83.900d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  28  2KTVVVTTILESPYVMMKK------------------------NHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSK------QTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRRKSKGKYAYLLESTMNEYIEQRK-PCDTMKVGG--NLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWKGECGS 261
8 -66.900d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  18  1..................ARLKGITLRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP-------PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKNGKIPYN----RIGIRIGTAGEDYYLREISGGSRNFYPL--KSRQEMYDSLLAGIIDVSFMDIGTAEYVT-NNIYCNLTLVGED--FDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQTK... 243
9 -54.800d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  25  1.PLLVATRVIPPFVLSNK--------------------------------GELSGFSIDLWRSIATQIGIESKLI----------EYSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGTGDI-----RSIDDLPGKVVATTAGSTAATYLREHHISV------LEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSI--LREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFD..... 219
10 -53.200d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  16  1..LKVGVVGNPPFVFYGE-----------------------------GKNAAFTGISLDVWRAVAESQKWNSEYV----------RQNSISAGITAVAEGELDILIGPISVTPERAAIITFTQPYFSSGIGLLIPGTATPL--------RSVGDLKNKEVAVVRDTTAVDWANFYQADV------RETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIR--VSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG..... 221
11 -51.900d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  20  1KELVVGT---MPFEFKQG--------------------------------DKYVGFDLDLWAEIAKGAGWTYKI-----------QPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGK--------VIAAKTGTATIDWIKAHLKP----KEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP--VSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE... 221
12 -51.300d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  24  22................................................QKGKIVGFDVDLLDAVMKAAGLDYEL-----------KNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDLKGK---------TIGVQNATTGQEAAEKLFG---KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGKE... 227
13 -50.700d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  16  20............................................EFQNDDKQFTGIDVDLLNAIAKNQGFKLKW-----------NFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDSIKSWKDLKGK--------TLGAKNGTASFDYLNAHAKEYGYTVKTF--TDATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFATP----IKPIPDGQYGFAVKKGSELIEMFNNGLANLRANGEYDKIIDKYLESD... 229
14 -50.500d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  15  1EKFIVGTNATPPF-------------------------------EFVDKRGEVVGFDIDLAREISNKLGKTLDV-----------REFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGENKHPLPLTQYR--------SVAVQTGTYQEAYLQS-----LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASDRPLALKIEAAVQEIRKEGVLAELEQKWGL..... 222
15 -49.800d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  18  20............................................EFVDADNKIVGFDIDVANAVCKEMQAECSF-----------TNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGAYHTFADLKGK---------KVGLENGTTHQRYLQDKQQA----ITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERSDPDYYGKGLGIAVRKDNDLLQEINAALDKVKASPEYAQMQEKWFT..... 228
16 -48.500d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  23  16............................................EMKDKKGNVIGFDVDLAREMAKAMGVKLKL-----------VPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKP-----ELTLVTKFGVSAEYAAKRLFK----NAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTS--LTYEPLGWAIKKGDPFLNWLNHFLAQIKHDGSYDELYERWFVDT... 227
17 -48.200d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  16  2LNLTIGT---PPFEVWSGNN------------------------------SSLYGFDIDLMQEICRRLHATCTF-----------EAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKISTFDDLHGK---------KIGVRKGTPYARQVLSENRN----NQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGGEGYSIMANPDQFLIKKINKILLEMEADGTYLRLYSEYF...... 228
18 -47.500d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  17  2..VRMGT---PPYNFIND-------------------------------AGEVDGFERELGDELCKRAGLTCEW-----------VKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDGADLS---------------IVAAQTATIQAGYIAESGATL------VEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFV--GDDVPLGGGVGMGLRESDGLRGKFDAAITSMKEDGTLNTMIKKWFG..... 212
19 -47.500d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  16  19............................................EFIDQNGKPAGYNVELTRAIAEVMGMTVEF-----------RLGAWSEMFSALKSGRVDV-LQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGR--------KVALHRDGIMHEYLAERGYG----KDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARS--IAAQRYGYAVRQGDALLARFSEGLAILRKTGQYEAIRAKWLG..... 224
20 -47.400d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  19............................................LFKSADGKLQGIDLELFSSYCQSRHCKLNI-----------TEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT--------NNLNELNKYSIGYPRGMAYSDLIKNDLEPYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKM---PIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMK..... 229
21 -47.100d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  10GKIVVAT---YPTSYHDTDSGSDK----------------------------LTGYEVEVVREAAKRLGLKVEF-----------KEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSG--------KTLKDLKGKKAAGAATTVYMEVARK----YGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIK-YMPNKQALVMKKSNALQKKMNEALKEMSKDGSLTKLSKQFFNKA... 237
22 -46.900d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17  4QTVRIGT---APF-------------------------------SSKDAKGEFIGFDIDLGNEMCKRMQVKCTW-----------VASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLKGK--------HVGVLQGSTQEAYANDNWRTKGVDVVAY--ANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVYFGDGTGVGLRKDDTLKAAFDKALTELRQDGTYDKMAKKYFD..... 232
23 -46.800d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  17  8GKLVVALNPDAPFEYQKVVD----------------------------GKNQIVGSDIELAKAIATELGVELEL-----------SPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLAT--------QSVNDLAQKKVGAQKGSIQETMAKDLLQNS----SLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEK-EQDDSYAVAMKKDSKLKEAVDKTIQKLKESGELDKLIEDAFKASIEK 238
24 -46.700d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  15  27............................................GFAQKDGSYAGFDIDLATAVFEKYGITVNWQPID-----------WDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSGITTAKDMTGK---------TLGAQAGSSGYADFEANLKNIVANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNDYNVFTVG-LETEAFAVGSRKEDTLVKKINEAFSSLYKDGKFQEISQKWFGEDVAT 245
25 -46.400d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  17  26............................................NYFDERNQLTGFEVDLGNAIAERLGLKPRW-----------IAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGPRT----------AKDLQGKVVGVQVGTTYMEAAQKIPGIK----EVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGEL--VFQERVAMAVAKGNKLLDALNRALAELMQDGTYARISQKWFG..... 230
26 -46.300d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  12  28............................................TYHDKDGKLTGYDVEVTRAVAEKLGVKVEF-----------KETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGV---------KTAQSLTSNYGEKAKAAGAQL------VPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDAVAKFSTAINELKADGTLKKLGEQFFGKD... 236
27 -45.400d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  18  2KSITIAT---APY-------------------------------NFKDAGGKLIGFDIDLGNDLCKRMNIECKF-----------VEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSNITPEQKAELDKFTKIFEGVKFGVQAGTSHEAFMKQMMPS----VQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPTGGLFGKGVGVGIRKEDALKALFDKAIDAAIADGTVQKLSQQWFG..... 249
28 -45.300d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  19  23............................................EFVDENGNIVGFDVDLAKEIARRLGVELKI-----------VDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDFR--------KTYEDLVGKTVAVQIGTTGDIEVSKY-----DGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLVIS----SGVLSSEQYGIAVRKEDTLLEFINSVLRELK-KSPYDVLIEKWFS..... 226
29 -45.200d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  13..LRVATTGDKPFSYRTE-------------------------------EGGYAGFDVDMAQRLAESLGAKLVV-----------VPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEARFQTLEQI-----DQPGVTAIVNPGGTNEKFARANLK----KARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQP--FDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL...... 232
30 -44.900d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  23  29...............................................IESRTVQGFDVDIAKAITKKIL--------GDNGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQIKSVDDLNAST--------TVLAVKGSTSAANIRQHAPD----AKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYELV----GGTFTNEPYGIAINKGQEFLKAVNQALEEMHADGTYDKIYQKWFPNE... 235
31 -44.800d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  19  12..ISVGTMGDKPYAFTTA-------------------------------DGNFTGFDIELFLNVAGRLGFKKEQVVFTG--------QEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAGITD----------AAGLKGKRLGVVQGTLQEIYAEKNFAG----TDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAV---NIPSFDAPAGFVIRKGNDLRNALDKGLKEAMQDGTWKKLHEKWFPGT... 232
32 -44.200d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  12  1KTVTLAT-TTNPFSYEK--------------------------------KGKLTGYDIEVAKEVFKASDYDVKY-----------QKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSDIKSYNDIAGH---------STQVVQGNTTVPMLQKFNKNHENNKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLP-SDQKPYVYFIFAQDQKLQKFVNKRLKKLYENGTLEKLSKKYLGGS... 229
33 -44.000d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  15  14..ARIAIANEPPFTAVGA-------------------------------DGKVSGAAPDVAREIFKRLGVA------------VASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG----LKSYKDIADNPDAKIGAPGGGTEEKLALEAGVP---RDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDALRDAFDVELAKLKESGEFAKIIEPYGFSACAA 255
34 -42.300d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  13  16............................................CFLDENGKLTGYDVELVKEIDKRLGYKFKFKTMD-----------FSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNS--------NSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIYEGQGSNDTANQLKTGRADATISTPFAVDFQN-KTSAIKEKVVGDV--LSNAKVYFMLGKDETLSKKVDEALQSIIDDGTLKKLSEKWLGAD... 230
35 -41.900d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  15  13..LKVGTTGDDPMAMKDPAT------------------------------NKYKGFDIDVMQELAKDMGVKITF-----------VPTEWKTIVSGITAGRYDIS-TSVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNLKKYSTWKSLNNK-----DVTIATTLGTSQEEKAKEFFP----LSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVP---DGEKNPAFLAMMVSKNDQWNDYVNEWIKSKKSSGFFNKLLAKYNLKS... 235
36 -40.700d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  15  25............................................GYVDEKGNNQGYDIALAKRIAKELENKVQFVLV-----------EAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDK---------TLLLNKGTTADAYFTQNYPN----IKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGI---KELGNKDVIAPAVKKGDKLKEFIDNLIIKLGQEQFFHKAYDETLKAHFGD 237
37 -40.200d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  28...............................................QATGEIKGFEVDVAKLLAKSI--------LGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGA---------NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE--------PDSFEPQSYGIVTKKDDPFAKYVDDFVKEH--KNEIDALAKKWG...... 230
38 -32.500d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  16  1.HPAY-SAREQQWM------ADHPVVKVAVLNLFAPF-------TLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDT----------VEELIAKLRSGEADM-AGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGR--------TVALVRNSAAIPLLQRRYPQ----AKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALD-LPPAEIALATTRGQTLMSILNKALYSISND-ELASIISRW....... 234
39 -20.600d3kg2a3 f.14.2.1 (A:508-632,A:774-817) Ionotropic glutamate receptor 2 (GluR2) ligand channel domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  68.......................................................................................NSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPXGAKDSGSKEKTSALSLSNVAGVFYILVGGLGAMLVALIEFCYK........................................................................................... 170
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.