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Query: d4lcba_ c.37.1.0 (A:) automated matches {Acidianus hospitalis [TaxId: 933801]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KVSFSDIVGLDDVKEALKEAIIYPSKRPDLFPLGWPRGILLYGPPGNGKTMLAAAVANEIDSYFIHVDAASIMSKWLGEAEKNVAKIFNTAREYSKKDNKPAIIFVDEIDALLGTYTSEVGGEVRVRNQFLKEMDGIMDKNENYMVYVIGATNKPWRLDEPFLRRFQKRIYVPLPDFNQRLALFKYYTSKVKLGNVDLQELAKMTEGYSASDIRDIVQSAHMRVVKEMFEKNLSEPREITMDDFKEVLKIRKPSVNQELLKAYEAWTEKFLast
1 -129.000d4lcba_ c.37.1.0 (A:) automated matches {Acidianus hospitalis [TaxId: 933801]}  ali model 3D-neighbors  100  1KVSFSDIVGLDDVKEALKEAIIYPSKRPDLFPLGWPRGILLYGPPGNGKTMLAAAVANEIDSYFIHVDAASIMSKWLGEAEKNVAKIFNTAREYSKKDNKPAIIFVDEIDALLGTYTSEVGGEVRVRNQFLKEMDGIMDKNENYMVYVIGATNKPWRLDEPFLRRFQKRIYVPLPDFNQRLALFKYYTSKVKLGNVDLQELAKMTEGYSASDIRDIVQSAHMRVVKEMFEKNLSEPREITMDDFKEVLKIRKPSVNQELLKAYEAWTEKF 270
2 -113.000d3d8ba_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  34  24PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQ-----PAVIFIDEIDSLLSQRGGEHESSRRIKTEFLVQLDGATTSSE-DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 297
3 -72.700d4cr2i2 c.37.1.20 (I:165-436) Proteasome regulatory particle base subunit Rpt2, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  31  14TESYSDIGGLESQIQEIKESVELPLTHPELYEEKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA-----PSIVFIDEIDAIGTKRSGGEREIQRTMLELLNQLDGFDDRGD---VKVIMATNKIETLDPALIRRIDRKILFENPDLSTKKKILGIHTSKMNLSDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE-------RRMQVTAEDFKQAKERVMKNKVEENLEGL....... 271
4 -72.200d2x8aa_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  35  1......IGALEDIREELTMAILAPVRNPDQFKAVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA-----PCVIFFDEVDALCPRRSDETGASVRVVNQLLTEMDGLEARQQ---VFIMAATNRPDIIDPAILRRLDKTLFVGLPPPADRLAILKTITKNGT-ADVNLEAIAGRCDCYTGADLSALVREASICALRQEMARQKSGNEKVSHKHFEEAFKKVRSSI............... 257
5 -64.400d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  32  8KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-----PCIIFIDEIDAVGRQRGGGHDEREQTLNQMLVEMDGF---EGNEGIIVIAATNRPDVLDPALLRRFDRQVVVGLPDVRGREQILKVHMRRVPLADIDAAIIARGTPGFSGADLANLVNEAALFAARG-------NKRVVSMVEFEKAKDKI................... 252
6 -50.100d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}  ali model 3D-neighbors follow..  17  2DYASYIMNGIIKWGDPVTRVLELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDMIGFSETAKCQAMKKIFDDAYK-----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQG--RKLLIIGTTSRKDVLQEMEMLAFSTTIHV--PNIATGEQLLEALELLGNFKDKERTTIAQQVKGWIGIKKLLMLIEMSLQMDPE........................................... 227
7 -24.600d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  7..SLDEFIGQENVKKKLSLALEAAKMRGEVLD-----HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ-------------GDMAAILTSLERGDVLFIDEIHRL--NKAVEELLYSAIEDFQIDIMIGKGPSAKSQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKT............................... 230
8 -23.900d2vhja_ c.37.1.11 (A:) automated matches {Pseudomonas phage [TaxId: 161736]}  ali model 3D-neighbors follow..  12  119...............................HRYASGMVIVTGKGNSGKTPLVHALGEALGGKYATVRFGEPLSGYNTDFNVFVDDIARAML-------QHRVIVIDSLKNVIGAAGGNTTSGSRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRANSLVISTDVDGEWQVLT..................................................................................... 271
9 -19.300d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  25  22..RLDDIVGQEHIVKRLKHYV----------KTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL---TQDAQQALRRTMEMF------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA-EGLELTEEGLQAILYIAEGDMRRAINIL...................................................... 211
10 -18.200d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  20  12..NLQQVCGNKGSVMKLKNWL--SFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG---------------VGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFDPNVIDRLIQTTRG----DIRQVI---------NLLSTISTTTKTINHENINEISKAWEKNI............... 253
11 -15.700d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  10  16....KRLPHREQQLQQLDILLGNWLRNPG----HHYPRATLLGRPGTGKTVTLRKLWELTTARFVYINGFIYRNFTFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD-----------ILSTFIRLGQEADKLGAFRIALVIVGHND-NLDPSTRGIMKYVIRFSPYTKDQIFDILLDRAKEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAQQNGRKHIAPEDVRKSSKEVLFG................ 276
12 -15.600d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  9..SLNALSHNEELTNFLKSLSDQPRDLPHL---------LLYGPNGTGKKTRCMALLESSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGKCVIINEANSL---TKDAQAALRRTMEKY------------SKNIRLIMVCDSMSPIIAPIKSQ--LLIRCPAPSDSEISTILSDVVTNERITKDILKRIAQASNGNLRVSLLML...................................................... 234
13 -15.200d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}  ali model 3D-neighbors follow..  17  19......VIGQEQAKKVFSVAVYNHYKR----VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS-SGEGVQQALLKIVEGSLVNIPDTSDILFICAGAFDGLAEIIKKRTTQNVL--IPELIGR---LPVLSTLDSISLEAMVDILQKPKNFKMDEVDLIFEEEAIKEIAQLALERKTGARGLR.............................. 325
14 -15.000d2p65a_ c.37.1.20 (A:) automated matches {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  21  34............................QILSRRTKNNPILLGDPGVGKTAIVEGLAIKIGRKLVSLDLSSLIAKYRGDFEERLKSILKEVQD----AEGQVVMFIDEIHTVVGAAEGALDAGNILKPML-----------ARGELRCIGATTVSEEKDKALERRFQQ-ILVEQPS.............................................................................................. 185
15 -14.500d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}  ali model 3D-neighbors follow..  16  6...FSAIVGQEDMKLALLLTAVDP------------GGVLVFGDRGTGKSTAVRALAARKPTPVVDLPLGVSEDRVVGDIERAISKGEKAFEPGLLARANRGYLYIDECN-LLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRD. 296
16 -14.400d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}  ali model 3D-neighbors follow..  15  155....................................RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHL---------NKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSI...................................................... 327
17 -14.000d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  10  16....PELRVRRGEAEALARIYLNRLLSGA---------YGSIGRVGIGKTTLAKFTVKRVSEKQAYVNAFNAPNLYIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAE----DLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSPQVESQIGFKLHLPAYKSRELYTILEQRAEDTVWEPRHLELISDVYGEDKGGD----ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN................... 287
18 -13.500d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  13  12....KDFFDREKEIEKLKGLR---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER-FNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDP---ESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPG--LTYFGFIYDNKNLDFAINQTLEYAKKLILKEFENFLHG.................... 283
19 -13.100d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  19  39......................................IFIYGSVGTGKTHLLQAAGNEAGYRVIYSSADDFAQAMVEHLKKGTINEFR------NMYKSVDLLLLDDVQFLSGKERTQI--------EFFHIFNTLYLLEKQ---IILASDRHPQKVSDRLVSRFEGGILVEILDNKTRFKIIKEKLKEFNLE------LRKEVIDYLLENTKNV...................................................... 200
20 -12.500d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  5......................................IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKQCALAALNDVRKFLSEEGGHVAVF-DATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVNDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMDVGQSYVVNRVADHIQSRIVYYLMNIHVTP.............................................. 212
21 -12.400d3iija1 c.37.1.1 (A:1-172) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  4....................................PNILLTGTPGVGKTTLGKELASKSGLKYINVGEEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYE--------------LETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQW.............................................................. 166
22 -12.200d5ep2a1 c.37.1.0 (A:141-387) automated matches {Photobacterium angustum [TaxId: 661]}  ali model 3D-neighbors follow..  19  26......................................VFITGESGTGKEVCAEAISPRHDKPFIALNCAAIPKDLI-ESELFVKGAFTGARQGAVEMAHNGTLMLDELCEM--DLDLQSKLLRFIQTGTYQKVGSSKMSSVD--VRFVCATNR--NPWEEVQERFREDLYISLPPLRERGGDIIEIAHA--LLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVREL.......................................... 222
23 -12.100d3kb2a1 c.37.1.1 (A:2-165) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  3......................................IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVY----AKKFKDYSILTERQLRFIEDKI---------KAKAKVVYLHAD-------SVIKKRLRVR-YIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLV...................................................... 163
24 -12.100d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  11  5......................................ILTIGCPGSGKSTWAREFIAK-NPGFYNINRDDYRQSIMAHEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPV................................................................................................ 151
25 -12.000d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  10..TFADVVGQEHVLTALANGL----------LGRIHHAYLFSGTRGVGKTSIARLLAKGLNCELIEIDAAS------RTKVEDTRDLLDNVQ-YAPARGRFKVYLIDEVHML----------SRHSFNALLKTLE-----EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL-EHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASGDGQVSTQAVSAM.................................. 236
26 -11.900d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  3......................................IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKDRRKVIIIDEIGKM-----------ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILSLLER................................................................................ 178
27 -11.900d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  16  8....................................KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQALGHQRYIDYAVRHSHKIAFIDTITTQAFCIQYEGKAHPFLDSMI---------KEYPFDVTILLKNNTEWVDDQLLKKLLDKYIEIESPSYLDRYNQVKAVIEKV-LNEEEISELQN................................................................... 192
28 -11.300d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  17  7......................................LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVI--LDGVVRPD----------------WLPAFTALARPLHYIVLRTT-------AEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFR................................................ 174
29 -11.200d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  12  5......................................YIITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVGLLALTWKNITDLTVNFLLAQNDVVLIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFI.................................................................................................. 174
30 -11.100d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}  ali model 3D-neighbors follow..  16  1...............................EQPKGINILITGTPGTGKTSMAEMIAAELDGFQH-LEVGKLVKE-------------NHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVD--YHSSELFPERWFHMVVVLHTS------TEVLFERLTKRQY-------------SEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEVLK.............................. 174
31 -10.900d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  24......VFGQDKAIEALTEAIKMARA-----EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-GTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT-------PEFRNRLDIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVD........ 291
32 -10.800d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2....................................RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG--YTEEVRQGGRRIGFDVVTLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT----------LSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVF----TKENRNHLLPDIVT................................................................................. 182
33 -10.500d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  25....................................HALLIQALPGMGDDALIYALSAGTHPDYYTLAPEKGKNTLGVDA---VREVTEKLNEHARLGGA-KVVWVTDAALL----------TDAAANALLKTLE-----EPPAETWFFLATREPERLLATLRSR--RLHYLAPPPEQ---YAVTWLSREVTMSQDALLAALRLSAGSPGAALALF...................................................... 205
34 -10.500d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}  ali model 3D-neighbors follow..  9  6......................................IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA---SIGPEFRALEGAWAEGVVAMARAGARII--IDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-------------------AVAEGRETAR..................................................................................................... 133
35 -9.740d3r20a_ c.37.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}  ali model 3D-neighbors follow..  12  4......................................VAVDGPAGTGKSSVSRGLARDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDADVKIFLTASAEERARRRNNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLV......................................... 217
36 -9.690d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  12  6......................................IIIAGPQNSGKTLLTLLTTDSVRPTVVSQEPLSAADY---PGHVKLRYKLSDYLKTRAKFVK-GLIFM--VDSTVDPKKLTTTA------EFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKIERRKKSLNEVERKINEEDYAENTLDVLQST-----------------------------DGFKFANLEASVVAFEGSINKRKISQWREWIDE. 207
37 -9.530d3akea_ c.37.1.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  11  5......................................VTIDGPSASGKSSVARRVAASSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADEVDRVVSAVARLPGVRAWVNRRLKEVPPPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRA------RERPQAYEEVLRDLLRRDERDKAQSAPAPDALV--DTGGMTLDEVVAWVLAHIRR....................................... 208
38 -9.530d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  9......................................YVLMGVSGSGKSAVASEVAHQLHAAFLD-ALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETVLVVDIDQPLEGVVASTIEVIKK...................................................................................................... 171
39 -9.470d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  11  47......................................LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIV---WLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDNTLFVFDDVVQEETIRWAQELRLTTRDVEISNAASQT-CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPNNKLESRGLVGVECITPYSYKSLAMALQRCVE.............. 275
40 -9.460d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  87....................................RGCIVL-PTGSGKTHVAMAAINELSPTLIVVPTLALAEQWKERLGIFVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE-----------------SYVQIAQMSIAPFRLGLTAT...................................................................................................................... 204
41 -9.390d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  13  132.......................................ILNLPTSAGRSLIQALLARYYGKILIIVPTTALTTQMADDFVDYVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKS--SSIISGLNNCMFKFGLSGSLRDGKANIMQYFGEIFKP................................................................................................................... 282
42 -9.260d1yj5a2 c.37.1.1 (A:351-522) 5` polynucleotide kinase-3` phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  8  17......................................VVAVGFPGAGKSTFIQEHLVSAGYVHVN--------------RDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPS-PVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG............................................................... 172
43 -9.240d2iyva2 c.37.1.2 (A:2-176) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}  ali model 3D-neighbors follow..  14  2....................................PKAVLVGLPGSGKSTIGRRLAKALGVGL--LDTDVAIEQRTGRS---IADIFATDGEQEFRRIEEDVV----------------RAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVR....................................................... 159
44 -9.020d2h92a_ c.37.1.1 (A:) CMP kinase {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  13  4......................................IALDGPAAAGKSTIAKRVASELSMIYVDTGAMTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLRNNDVTQHVSYVASKLAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRY-------------------QLRGIESNFEDLKRDIEARDQYD-----MNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQI............... 216
45 -9.020d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  16  33.....................................GICLADDMGLGKTLFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHL-VLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSY--SEFKSKFATPIKKGDNKAIISPFILRRTKYDKAIINDL..................................................................... 229
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Luz JG, Hassig CA, Pickle C, Godzik A., Meyer BJ, Wilson IA. XOL-1, primary determinant of sexual fate in C. elegans, is a GHMP kinase family member and a structural prototype for a class of developmental regulators. Genes Dev. 2003 Apr 15;17(8):977-90. Epub 2003 Apr 02.