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Query: d4oxxa_ c.23.5.0 (A:) automated matches {Citrobacter braakii [TaxId: 57706]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNALILYGTETGNAEACATTISQVLADTVDTKVHDLADMTPRAMLDSGADLIVFATATYGEGEFAGGGAAFFETLRETKPDLSGLRFAVFGLGDSYYTTFNQAGATAATILASLGGTQVGDTARHDTSSGDDPAATAAEWAREILTALATPAVLast
1 -82.800d4oxxa_ c.23.5.0 (A:) automated matches {Citrobacter braakii [TaxId: 57706]}  ali model 3D-neighbors  100  1MNALILYGTETGNAEACATTISQVLADTVDTKVHDLADMTPRAMLDSGADLIVFATATYGEGEFAGGGAAFFETLRETKPDLSGLRFAVFGLGDSYYTTFNQAGATAATILASLGGTQVGDTARHDTSSGDDPAATAAEWAREILTALATPAV 153
2 -70.300d2m6sa_ c.23.5.0 (A:) automated matches {Escherichia coli [TaxId: 469008]}  ali model 3D-neighbors follow..  21  3.EIGIFVGTMYGNSLLVAEEAEAILTAGHKATVFEDPELSDWLP--YQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCNGGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEHWGTLLS.... 149
3 -69.000d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  31  1..ITIISASQTGNARRVAEALRDDLLAKLNVKLVNAGDYKFKQI--ASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADV----EYQAAASEWRARVVDALKSRA. 146
4 -68.700d5b3ka_ c.23.5.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 208964]}  ali model 3D-neighbors follow..  27  1MKVAILSGSVYGTAEEVARHAQKLLSAGLEASHLPRASLDELKA--FAPEAFLVVTSTTGMGELPDNLQPLYYAIRDQLPAWHGLPGGVIGLGDSSYDTFAGGGEQVRELFGELGVREVLPMLRLDASETVTPETDAEPWLAEFAAALKG... 150
5 -68.100d3qe2a1 c.23.5.0 (A:69-239) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  14.NIIVFYGSQTGTAEEFANRLSKDAHRGMRGMSADPEEYDLADLSSIDNALVVFCMATYGEGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDG--NLEEDFITWREQFWLAVCE... 164
6 -67.600d2hnba_ c.23.5.0 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  3.DITLISGSTLGGAEYVAEHLAEKLEEA-GFTTETLHGPLLEDL--PASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWVNLLK.... 147
7 -67.400d4h2da_ c.23.5.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  2.QLLVLFGSQTGTAQDVSERLGREARRRLGCRVQALDSYPVVNL--INEPLVIFVCATTGQGDPPDNMKNFWRFIFRKNLPLCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSALLPVCLGDDQHELGPDAAVDPWLRDLWDRVLG... 152
8 -67.300d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  28  4VKATILYATETGKSQAYAKTLCEIFKHAFDAKAMSMEEYDIVHL--EHEALVLVVTSTFGNGDPPENGEKFGCALMEMRHPLANVRFSVFGLGSRAYPHFCAFGHAVDTLLEELGGERILKMREGDELC--GQEEAFRTWAKKVFKAACD... 191
9 -66.500d3fjoa1 c.23.5.0 (A:47-219) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  14.NYLVLYASQTGTAEDYAKKFSKELVANLNVMCADVENYDFESLNDVP-VIVSIFISTYGEGDFPDGAVNFEDFICNAEAGLSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGEADDGAG-TTDEDYMAWKDSILEVLKD... 163
10 -60.700d5ljla1 c.23.5.0 (A:1-146) automated matches {Streptococcus pneumoniae [TaxId: 170187]}  ali model 3D-neighbors follow..  26  3.LAKIVFASMTGNTEEIADIVADKLRDGLDVDVDECTTVDASDF--LEADIAIVATYTYGDGELPDEMMDFYEDLAD--LNLNGKIYGVVGSGDTFYDEFCKAVDDFDRVFVSTGAEKGSECVKVDLSAEEEDIERLEQFAEELAAKV..... 146
11 -56.200d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}  ali model 3D-neighbors follow..  24  3.PLLVLYGSNMGTAEGTARDLADIAMSGFAPQVATLDSHAGN-----PREGAVLIVTASYNGHPPDNAKQFVDWLDQASADVKGVRYSVFGCGDKNWTTYQKVPAFIDETLAAKGAENIADRGEADASD--DFEGTYEEWREHMWSDVAA... 148
12 -55.800d1j8qa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  30  1AKALIVYGSTTGNTEYTAETIARELADGYEVDSRDAASVEAGGLFE-GFDLVLLGCSTWGDDELQDDFIPLFDSL--EETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRID-GDPRAARDDIVGWAHDVRGAI..... 147
13 -47.700d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}  ali model 3D-neighbors follow..  19  3.KIGLFYGTQTGKTESVAEIIRDEFGND-VVTLHDVSQAEVTDL--NDYQYLIIGCPTLNIGELQSDWEGLYSELDD--VDFNGKLVAYFGTGDQIADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSTDDRIKSWVAQLKSEFG.... 168
14 -41.000d1rlja1 c.23.5.7 (A:1-126) Flavoprotein NrdI {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  2..VQIIFDSKTGNVQRFVNKTGFQQIRKVDEMDHVDTPF-------------VLVTYTTNFGQVPASTQSFLE-------KYAHLLLGVAASGNKVWDNFAKSADTISRQYQVPILHKFELSGTSKD------VELFTQEVERVVTKSSAK.. 125
15 -34.100d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]}  ali model 3D-neighbors follow..  14  1..MKIVYWSGTGNTEKMAELIAKGIIEGKDVNTINVSDVNIDEL--LNEDILILGCSAMTDEVLEESEFEPFIEEIS--TKISGKKVALFGSYGWGD---GKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQD.................. 127
16 -23.200d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  12  4.KVVIFYDSMWHSTEKMARVLAESFRDGCTVKLMWCKACHHSQIMSEDAGAVIVGSPTHN-NGILPYVAGTLQYI--KGLRPQNKIGGAFG----SFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQLKTMAQTIARALKA... 148
17 -20.600d2ohha2 c.23.5.0 (A:255-403) automated matches {Methanothermobacter thermautotrophicus [TaxId: 145262]}  ali model 3D-neighbors follow..  16  4.RVTVIYDTMHGSTRKMAHAIAEGAMSGVDVRVYCLHEDDRSEIVKDESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFG----SMGGNGGATGTMKELLAEAGFD-VACEEEVYYVPTGDELDACFEAGRKLAAEIR.... 149
18 -20.200d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  5.KVTVIYDSMYGFVENVMKKAIDSLKEGFTPVVYKFSDEERPAISEILKDIALIFGVSTYEAEIHPLMRFTLLEI--IDKANYEKPVLVFG----VHGWAPSAERTAGELLKETKFRILSFT---EIKGSNMDERKIEEAISLLKKELE.... 148
19 -19.800d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  17  3.KVLVIYDTRTGNTKKMAELVAEGARSGTEVRLKHVDEATKEDVL--WADGLAVGSPTNM-GLVSWKMKRFFDDVLGLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVF.................................. 120
20 -19.300d4d02a2 c.23.5.0 (A:250-400) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  19  4.RITIFYDTMSNNTRMMADAIAQGIAERVAVKIFNVARSDKNEILTNRSKGVLVGTSTMN-NVMMPKIAGLVEEMTGLR--FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFE-MSLSLKAKWRPDQDALKLCREHGREIARQWALA.. 150
21 -17.800d2q9ua2 c.23.5.1 (A:254-412) Nitric oxide reductase C-terminal domain {Giardia intestinalis [TaxId: 5741]}  ali model 3D-neighbors follow..  11  5.KVTVVLDSMYGTTHRMALALLDGARSGCETVLLEMTSSDITKVALHDSGAVAFASPTLN-NTMMPSVAAALNYVRGLTL-IKGKPAFAFG----AFGWSNRAVPDIVAELRDGCKADVYKGITFKFNYTEELLEQAYNAGVDLGKRAIA... 152
22 -15.300d3d7na_ c.23.5.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  16  3.NTVVVYHSGYGHTHRMAEAVAEGAEAHAIDAEGNLSEDGWAAL--DAADAIIFGTPTY--GGPSWQFKKFADASSKFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHG...................................... 117
23 -11.900d1ydga1 c.23.5.8 (A:3-201) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]}  ali model 3D-neighbors follow..  14  3VKLAIVFYSSTGTGYAMAQEAAEAGRAGAEVRLLKVRETAPQDVIDGQD------AWKANIEAMKDVPEATPADLEWAE---------AIVFSSPTR--FGGATSQMRAFIDTLGG..................................... 102
24 -11.400d3zhoa_ c.23.5.8 (A:) automated matches {Escherichia coli [TaxId: 405955]}  ali model 3D-neighbors follow..  21  2.KVLVLYYSMYGHIETMARAVAEGASKGAEVVVKRVPETMPPQLFEKDYDAIIFGTPTR--GNMSGQMRTFLDQ............................................................................... 92

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.