current user: public

If you have questions about the server, please let us know.

Query: d4q6ba_ c.93.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .
# Score Template Links and tools%idFirst EEIFIGVAWPFASLDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTDHGYIHVFRNIPSDQEIARQLAIYLAEQGHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGMDGIFIAKTATGGGTEFLVDAKSVGIEVPLIAGNSWDALSLTEDIENIGMTAEGLLVGSFFNPQRPDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGPWEGVMGMHRFDGRGDDIGDLVVLKKMKDGRFEYLLast
1 -101.000d4q6ba_ c.93.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}  ali model 3D-neighbors  100  1EEIFIGVAWPFASLDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTDHGYIHVFRNIPSDQEIARQLAIYLAEQGHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGMDGIFIAKTATGGGTEFLVDAKSVGIEVPLIAGNSWDALSLTEDIENIGMTAEGLLVGSFFNPQRPDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGPWEGVMGMHRFDGRGDDIGDLVVLKKMKDGRFEYL 346
2 -91.500d3huta1 c.93.1.0 (A:40-384) automated matches {Rhodospirillum rubrum [TaxId: 269796]}  ali model 3D-neighbors follow..  23  1.ALLLGYELPLTGYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAP-FLRALRARGSALPVYGSSALYS---PKFIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGAIPTLFAAHGYDAVGIMLAAVGRAGEVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVI 345
3 -87.600d1z15a_ c.93.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  27  1EDIKVAVVGAMSGYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQ-ILRQARAAGLKTQFMGPEGVAN---VSLSNIAGESAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSD--DPAEIAKYLKAN-SVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTATD 342
4 -85.400d3ipca1 c.93.1.0 (A:2-348) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  26  1.DVVIAVGAPLTGFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVAD-GVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGL-IIRQAADQGLKAKLVSGDGIVS---NELASIAGDAVEGTLNTFGPDPT-LRPENKELVEKFKAA-GFNPEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKG-SFPTALGEISFDEKGDPKLPGYVMYEWPDGKFTYI 345
5 -83.800d4nqra_ c.93.1.0 (A:) automated matches {Anabaena variabilis [TaxId: 240292]}  ali model 3D-neighbors follow..  18  1NTIPIGIALAQTSLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGIPEIG-DYVARVSAPVSVVAPNSVKAALKQNIKKVAVFFANDAFSKSETEIFQQTVKDQGLELVTVQKFQTTDTDFQSQATNAINLKPDLVIISGLAADGGN-LVRQLRELGYQGAIIGGDGLNT---SNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKEPPQFSAQAFAAVQVYVESLKALDTKNKTELNKQLLT-GKYNTPLGEISFTPIGEVVQKDFYVAQIKMEKDG.. 355
6 -83.200d3td9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  26  1.VVKIAVILPMTGFGRMVWEGIQIAHEEK---PTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNGAKRVVVFTDEQDYSVGLSNFFINKFTELGGQVK-RVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIAL-ISRQARQLGFTGYILAGDGADA---PELIEIGGEAVEGLLFTTHYHPKASNPVAKKFVEVYKEKYGKEPAALNALGYDAYMVLLDAIERAGSFDREKIAEEIRKTRNFNGASGIINIDENGDAIKS-VVVNIVKNGSVDFE 342
7 -82.700d4gnra_ c.93.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  22  1KTIKIGFNFEESGYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGLTKGQ-DYLFIGTFQDSFQGKIISNYVSEKNAKKVVLYTDNSDYAKGIAKSFRESY---KGEIVADETFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGK-IVNQARGMGIDKPIVGGDGFNG---EEFVQQATEKASNIYFISGFSTTEVSAKAKAFLDAYRAKYNEEPSTFAALAYDSVHLVANAAKGAK--NSGEIKDNLAKTKDFEGVTGQTSFDADHNTVKT-AYMMTMNNGKVEAA 343
8 -73.400d3snra_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316057]}  ali model 3D-neighbors follow..  16  3NEITVGISVTTTGLGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLPI--TPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAAL-PQTTLRERGYNGLIYQTHGAAS---MDFIRIAGKSAEGVLMASGPDTALTKKPGMALVKVYEEKYGPSSSQFAGHSYDAFKVLERVVPVALKKFREALREAFLTEKDIAASQGVYNFTETDRLDDRSRILLTVKNGKYVIV 358
9 -72.900d3sg0a_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  19  2AEIKIGITMSASGLGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVADERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVL-PQKALRERGFKGAIYQTHGVAT---EEFIKLGGKDVEGAIFAGEAFSGAEDKVKARFVDAYKAANGAAPTIFGVHLWDSMTLVENAIPAALKAFRAAIRDQIEKSKDLALNNGLSNMNHNGYDERS-AFLIEIRDGAFRL. 360
10 -62.900d1peaa_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  19  3....IGLLFSETGIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYS---PNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIPLYPSDDDLQRAVERIYQARADVVFSTVVGTG-TAELYRAIARRYGRRPPIASLTTSE---AEVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDID-IDAPQGPVRVERQNNHSRLSSRIAEIARGVFQVR 347
11 -61.500d3n0xa_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  14  1.DLKIALIYGKTGYAKQTETGLMMGLEYATKGTMLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITEKWNRYIFRTGRNSSQDAISNAVAIGKQG-VTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGME-FDTPKGKMVFRKEDHQALQSMYHFKVKVDP.... 345
12 -43.500d2h4aa1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  15  2...QIGLLLPLSGLGTTIQSGFNDAKG---------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNLDVLADPAQIQGMDVLALNATPNSRAIPQ--CYYGLSPED--EAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNS--NTTALYAVASPTELAE-MKGYLTNIVPNLAIYASSRASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQLMR--LYAMGADAWLLINQFNELR-----------QVPGYRLSGLTGILSADTNCNVERD-MTWYQYQDGAIVPV 317
13 -32.600d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  6QKIEVLVLLPQDDSLTRVRPAIEYALRSVEGNGTPPGTRFQVAYEDSDCGNRALFSLVDRVARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASEVVIMCASSDTIRSIMLVAHRHGMDYAFFNIELFNSSRGDKHDFEAKQAYSSLQTVTLLRTV--KPEFEKFSMEVKSSVEKQGNMFVEGFHDAILLYVLALHEVSKKDGGKIIQQTWNRT-FEGIAGQVSIDANGDRYGDFSVMTDVEAGTQEVI 387
14 -29.900d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  2.DLTVAVVLPLTNTSARVGPAVELALARVKARPDLLGWTVRMVLGSSECSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVEGDPDHYPKLLRAVRRKG---VIYICSSPDAFRNLMLLALNAGLDYVFFHLDVFGQERGDGQDRSARQAFQAAKIITYKEPD--NPEYLEFLKQLKLLADGLKNIIPASFHDGLLLYVQAVTETTVTDGENITQRMWN-RSFQGVTGYLKIDRNGDRDTDFSLWMDPETGAFRVV 391
15 -28.300d5x2mb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  17  17.DIKLGGLFPINKDGLGRALVMKYAVEEINANSQLLGVKLGYKIYNTCRHSAVIVRPALSFLTETDMVAVIGPQSSEMVTVIGKLLGFFLMPQISFGATSDKFSDSLYPSFFRTVPSDIRQVDAMVQLIKKFNWNWVAVVGSEEEYGQQGVQQFSKKAEDMGVCVAYQGLIYDDPKPAIQTIINNIQTTEVKVVVVFSLVSPAVSFFEEVIKKNLTGVWIASSSWAISDKVYSLPNI-DSIGTVIGFID--ETETLELLSPFTEVLFKKKEESVQRTAFSVYAAVYTVAHALHKLTRLYPWKLLEVLKEFS-VNISNTSLKFDQNGNPNIGYSVI........... 432
16 -27.100d3h6ga_ c.93.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  2HVLRFGGIFEYSGPMGAEELAFRFAVNTINRNRTLLPNTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQ-TRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYN----LKIRQLPADTKDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAMGMMTEIFTTLDLFALDVEPYRY------SGVNMTGFRILNTENTQVSSIIEKWSMERLQAPTTDAALMYDAVHVVSVAVQQFPQMTVSRFMSLIKEAH-WEGLTGRITFNKNGLRTDFDLDVISLKEEGLEKI 370
17 -27.000d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  20  9.DVIIGALFSVEQYGIQRVEAMFHTLDKINADPVLLNITLGSEIRDSCWHSSVALEQSIEFIRKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKINAGEKSFDRLLRKLRERLPKAVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEDTNTRNPWFPEFWQHRFQYVQDSKMGFVINAIYAMAHGLQNMKPIDGRKLLDFLIKSS-FVGVSGEVWFDEKGDAPGDIMNLQYTEANRYDYV 460
18 -26.600d5x2ma_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  14  9.DYLIGGLFNIILPNYRRFQMMRFSVEEINNSSSLLNVSLGYQMFDHCSDIHSFPGIFKLLSVNDLAIGVVGPFTSTHALSIAPIFMTNLFPMVSYGCSGSVFSKENYPSFLRTVHSNKDVINAIVGIILNFNWRWVAFLYSDDDFGKDGLEQFKNKIEDSEICLAFYKAI-NVNTDYLQVFKQIEEQNIKVIVVFAPKVYAEAVVESAVQLNVTNKVWIADDGWSLNKKLPSMNGI-QNIGTVLGVAQ--PVVTIPGFTDFIYSAIKSLLNADPSFSFPVYAAVYAIAHALHNTITVHPHMILEELKKSN-FTLLNQTVQFDENGDPKFGSLSVVFWNSGSY... 424
19 -25.100d3hsya_ c.93.1.1 (A:) Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  1NSIQIGGL--FPRGADQEYSAFRVGMVQFSTS------EFRLTPHIDNLEVANSFAVTNAFCSSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPF-------VIQMRPDLKGALLSLIEYYQWDKFAYLYDSDR--QAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVK------IIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKE-KYTSALTYDAVQVMTEAFRNLRKQRIEEIERALKQVQ-VEGLSGNIKFDQNGKRINYTINIMELKTNGPRKI 362
20 -24.900d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  2SIIHIGAI--FDESAKKDDEVFRTAVGDLNQNEEILTEKITFSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTAGTPRSGNDDYTLSVRPPVYLHDVILRVVTEYAWQKFIIFYD-SEYDIRGIQEFLDKVSQQGMDVALQKVENNINKMITTLFDTMRIEELNRYAILVMNPATAKSFITEVVETNLVAFIIINEEINDVDVQELVR---RSIGRLTIIRQTFPVPQN--ISQRCFRGNHRISSNMEISNLYIYDTVLLLANAFHKKLEDRKRSMLETIKKGG-VSGLTGELEFGENGGNPNVHFEILGTNYGE.... 384
21 -11.700d4zjpa1 c.93.1.1 (A:24-292) automated matches {Actinobacillus succinogenes [TaxId: 339671]}  ali model 3D-neighbors follow..  11  1.QETIALTVSTLDFFVSLKDGAQKKATELG---------YKLVVLDSQNDPSKELSNVEDLTVRGAKVLLINPTDSAAVSNAVAIANRNKIPVIT------DRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGDGAKVIQLEGLAGTSAAEGFKQAIEAHKFDVLASQPADFDRTKGLNVTENLLASKGSVQAIFAQNDEMALGALRAISAAGKKVLVVGFDG.......................................................................................................................... 215
22 -11.500d4ylea_ c.93.1.0 (A:) automated matches {Burkholderia multivorans [TaxId: 395019]}  ali model 3D-neighbors follow..  11  2GKPKVALVMKSLAFFLTMENGAKEYQKHNASQ------DLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKNLNVPFVGPDNRKARKVGDYLAKKAGDQVGIVESTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGKKVYVVGYDN.......................................................................................................................... 229
23 -10.800d4joqa1 c.93.1.0 (A:25-319) automated matches {Rhodobacter sphaeroides [TaxId: 349102]}  ali model 3D-neighbors follow..  11  4KVGTIGIAIP-HGFMGGLNFHAQDTIKRLQEV------PQLDFVLATAGNAGKMVNDIEDMVATRNISALVLPFESEPLTSPVQAVKEAGIWVTV---VDRGLSVEGIEDLY-VAGDNPGFGRVAGEYFAQHLESGKKIVVLRGIPTTLDNERFTAAIEGSGIEVLDMQHGNWNRDDAFNVMQDFLSKYPQIDAVWAADDDMAIGAMEAIAQAGREMWVMGGAGMKE....................................................................................................................... 229
24 -10.700d4ry9a_ c.93.1.0 (A:) automated matches {Verminephrobacter eiseniae [TaxId: 391735]}  ali model 3D-neighbors follow..  12  2.AFKIGVSMK-APYFAAQMEAAKARGKELG---------YEVLATDAQGKLQKQISDVEDLVTRGVKLLIINPADSEGLVNAVNNASANGVKVVVIDST----LNPRANFVTQVQSSNSINGALVGHWVIEE--LKIALLS-RLGVLSGIIEAQLRKFGKADLTVVGQGWGHWNDEGGLKAMEDLLVANKDINMVLGENDSMVLGARRAIESAGRILLVAAADA.......................................................................................................................... 228
25 -10.700d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}  ali model 3D-neighbors follow..  11  39RPIKISVVYPVSDYWVRNIASFEKRLYKLNIN------QLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFKHTYYSVLYFSEGYSDVRGDTFIHQVNRDNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGRDIMINGWGG.......................................................................................................................... 265
26 -10.600d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  3...EYAVVLKTLSFWVDMKKGIEDEAKTL-------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDK--GEVAIIEAGNASGEARRNGATEAFKKAQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKKVLVVGTDG.......................................................................................................................... 228
27 -10.400d3brsa_ c.93.1.0 (A:) automated matches {Clostridium phytofermentans [TaxId: 357809]}  ali model 3D-neighbors follow..  1.QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEI---KLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDIADIT-----VATDNIQAGIRIGAVTKNLKSGKIGVISKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLKVKLVCIDS.......................................................................................................................... 221
28 -10.100d2h3ha1 c.93.1.0 (A:1-305) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  2..LTIGVIGKSVHYWSQVEQGVKAAGKALGVDTKFFV--------PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVY-----IGTDNYQAGYTAGLIMKELGKGKVVIGTLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKKVKIVCFDT.......................................................................................................................... 217
29 -9.610d3ksma1 c.93.1.0 (A:39-313) automated matches {Hahella chejuensis [TaxId: 349521]}  ali model 3D-neighbors follow..  12  2...KLLLVLKGDSYWRQVYLGAQKAADEA-------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALLAPNSAEDLTPSVAQYRARNIPVLV--------SDLAGDAHQGLVATDNYAARALLATLDLSKERNIALLRAGNASTDQREQGFLDVLRKHKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMQFGFIGFDQ.......................................................................................................................... 222
30 -9.460d4rwea_ c.93.1.0 (A:) automated matches {Yersinia pestis [TaxId: 1035377]}  ali model 3D-neighbors follow..  12  1ELNSIGVTVGDLAFFVQITKGVELEARKLA------GDKVKVTLVSSGYDLGQQVAQIDNFIAAKVDMIILNAADSKGIGPAVKRAKDAGIVVVAVDVAAEGADAT-------ITSDNTQAGAMACKYISDRLKEKGNVVIINGPPVSAIQNRCESEFKKYDIKVLSSNQNAKGSRE-LEVMTSLLAVNPKIDGVFAINDPTAIGADLAAKQAQ-EFFIVGVDG.......................................................................................................................... 219
31 -9.410d4yo7a_ c.93.1.0 (A:) automated matches {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  10  5GQKVIGVSSNLDEFLTYMQDAMKEEAANYPD--------FEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMVNDAGIPIIIANRT----FDGVDQATAFVGSESIQSGLLQMEEVAKLLNNEGNIAIMDGELGHEAQIMRTEGNKQIGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVANNDEMALGAILALEAVGKDVIVAGIDATPA....................................................................................................................... 227
32 -9.270d4wuta_ c.93.1.0 (A:) automated matches {Agrobacterium vitis [TaxId: 311402]}  ali model 3D-neighbors follow..  10  2...EIAVIVKTVNFWQNVQKGADAAIGKQK------AHTITFQGPAAESAIADQVNMVENAVNRKVDAILLAPSDPDALVPAVKKAWEARIPVVI---IDSMLSKDAEKYYQAFLATDNKAGELAAKAMIQKTEGKIAVMSAGAGSEIGRVGGFTDYIKANKLQIVGPYYSQSQMATALNQTTDVLAANADLKGIFGANEPTAIGMGRAIKQAGKKLVAIGFDG.......................................................................................................................... 223
33 -9.220d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  1.NLKLGFLVKQPEWFQTEWKFADKAGKDLGFE----------VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRMAITANELDTARRRTTGSMDALKAAGKQIYQVPTKSNDIPGAFDAANSMLVQHPEVWLIVGMNDSTVLGGVRATEGQGFDIIGIGING.......................................................................................................................... 232
34 -9.210d2fvya_ c.93.1.1 (A:) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1.DTRIGVT--IYKYDDNFMSVVRKAIEQDAKA-----PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHGQIQFVLLKPGHPDAEARTTYVIKELNDKGIKTTAMWDTAQAKDKMDAWLSGPNANKIEVVI--ANNDAMAMGAVEALKAHNKSIPVFGVDA.......................................................................................................................... 236
35 -9.130d4irxa1 c.93.1.0 (A:39-325) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  12  1...EVVVSFN-QPFFVAMRRELEDEAAKLG---------VKVQVLDAQNNSSKQISDLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRN----IAGGKTAVPHVGADNVAGGRAMADWVVKTYPAGARVVVITNDPGSSSSKGVHDGLAAGAFKIVTEQTANSKRDQALTVTQNILTSMRDTPPILCLNDDMAMGALEAVRAAGLKVKVIGFDA.......................................................................................................................... 221
36 -9.120d3ma0a1 c.93.1.0 (A:1-307) automated matches {Escherichia coli [TaxId: 511145]}  ali model 3D-neighbors follow..  11  1KEVKIGMAIDDLRL-QKDRDIFVKKAESLG---------AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLA------DRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMELTANNNKIDAVVASNDATAGGAIQALSAQGLKVAISGQDA.......................................................................................................................... 223

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.