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Query: d4rd4a1 c.37.1.8 (A:2-206) automated matches {Sulfolobus solfataricus [TaxId: 273057]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AWPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYLast
1 -103.000d4rd4a1 c.37.1.8 (A:2-206) automated matches {Sulfolobus solfataricus [TaxId: 273057]}  ali model 3D-neighbors  100  1AWPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 205
2 -68.600d2c78a3 c.37.1.8 (A:9-212) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  30  1.....KPHVNVGTIGHVDHGKTTLTAALTYVA----------AAENPNVEVKDYGDIDKAPEERARGITINT----AHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFMNKVDMVDPELLDLVEMEVRDLLNQYEFDEVPVIRGSALLALEQMHRNPKTRR...... 182
3 -64.900d4ac9a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}  ali model 3D-neighbors follow..  34  2....DFKNINLGIFGHIDHGKTTLSKVLTEIASDKLPESQKRGITIDIGFSAFKL----------------------------ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGP-KTQTGEHMLILDHFNIP-IIVVITKSDNAGTEEIKRTEMIMKSILQSTHLKNSSIIPISAKTGFGVDELKNLIITTLN... 174
4 -61.400d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  24  1..GKEKSHINVVVIGHVDSGKSTTTGHLCGGIDKRTIEKFEKEAALGKGSFKYAWVLDKLKAERERGITIDIAL----WKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAQTREHALLAFTLGVRQLIVAVNKMDSVKESRFQEIVKETSNFIKKVGYKTVPFVPISGWNGDNMIEATTNAPWY..... 208
5 -59.500d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}  ali model 3D-neighbors follow..  23  4..HERKEMLRFLTCGNVDDGKSTLIGRLSKMIYEDHLEAITRDSK-TGDDVDLALLVDGLQAEREQGITIDVA----YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLGIKHIVVAINKMDLNDERVFESIKADYLKFAEGIAFTTMAFVPMSALKGDNVVNKSERSPWY..... 206
6 -35.700d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  28  7.........IVSVLGHVDHGKTTLLDHIRGS---AVASREAGGITQHIGATEI----------PMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGF-KPQTQEALNILRMYRTP-FVVAANKIDRIHQQKLDTKVYELVGKLHEEGFSQVSIIPISAITGEGIPELLTML........ 212
7 -34.700d2lkca1 c.37.1.0 (A:5-178) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  30  6.........VVTIMGHVDHGKTTLLDAI-------------RHSKVTEQEA-------------------GITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV-MPQTVEAINHAKAANVP-IIVAINKMDKPEAN--DRVMQELMELVPEEWGGDTIFCKLSAKTKEGLDHLLEMI........ 161
8 -28.000d3b82a1 c.37.1.8 (A:2-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  25  12.MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRATDTRKDEQERGITIKSTAISLYSEMSDEDVKEIK------------QKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-CVQTETVLRQALGERIKP-VVVINKVDRALLE-LQVSKEDLYQTFART................................. 180
9 -25.600d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}  ali model 3D-neighbors follow..  18  4.........TVALVGHAGSGKTTLTEALLTTTTDYTPEAKLHRTTVRTGVAPLLF----------------------------RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-QVGTERAWTVAERLGLPR-MVVVTKLD--KGGDYYALLEDLRSTLGPILPIDLPLYEGGKWVG.................. 164
10 -25.200d5tv2a1 c.37.1.0 (A:1-288) automated matches {Vibrio vulnificus [TaxId: 216895]}  ali model 3D-neighbors follow..  19  12.........NIGICAHVDAGKTTTTERILAATMDWMEQEQERGITITSAATTTFW---------------------RGMEAQFQDHRVNIIDTPGHVDFTIEVERSLRVLDGAVVVFCGSSGV-EPQSETVWRQADKYHVPR-MVFVNKMDRAGADFLRVVDQIKNRLGANPVPIQLNVGAEEDFKG.................. 181
11 -25.100d3jb9b1 c.37.1.8 (B:68-451) Pre-mRNA splicing factor Cwf10, N-terminal domain {Schizosaccharomyces pombe 972h- [TaxId: 284812]}  ali model 3D-neighbors follow..  17  68.LTGTDDVRSFIVAGHLHHGKSALLDLLTHPDTKPPKRRSLR-------------YTDTHYLERERVMSIKSTPLT-VSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGV-MINTTRIIKHAILHDMP-IVLVLNKVDRLILEKLRHVIDEVNDNICQISKDLKYRV......................... 245
12 -24.000d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  22  3..........IIFAGRSNVGKSTLIYRLTG---KKVRRGKRPGVTRKIIEI--------------------------------EWKNHKIIDMPGFDEIVHFIEDNAKNIDVAVLVVDGKAA-EIPIDVEFYQFLRELDIP-TIVAVNKLDKIKNVQEVINFLAEKFEVP-LSEIDKVFIPISAKFGDNIERLKNRIFEVIR... 182
13 -23.800d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  17  8..........VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL------------------------------TEGRRQIVFVDTPGGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHELLP------AEPRMLSALDERQVAELKADLLALMP... 170
14 -23.300d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  1SKPEITDAIKVAIVGRPNVGKSTLFNAILN--KERALVSPIPGTTRDPVDDEVFI----------------------------DGRKYVFVDTAGEKYSNYRVVDSIEKADVVVIVLDATQGI-TRQDQRMAGLMERRG-RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA... 182
15 -22.400d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  8..........IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH------------------------------TEGAYQAIYVDTPGNRLMNKAASSSIGDVELVIFVVEGTR------TPDDEMVLNKL--APVILAVNKVDNVQEK--ADLLPHLQFLASQMNF--LDIVPISAETGLNVDTIAAIVRKHLP... 171
16 -22.300d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  3..........VLIVGRPNVGKSTLFNKLVK--KKKAIVEDEEGVTRDP-----------------------------QDTVEWYGKTFKLVDTCGSQKMKEVTLNMIREADLVLFVVDGKRGI----TKEDESLADFL--VDTILVANKAENLREFEREVKPELYS-------LGFGEPIPVSAEHNINLDTMLETIIKKLE... 164
17 -22.100d3pr1a_ c.37.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  25..........VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSIN---------------------------------FYLVNSKYYFVDLPGYKRLVEDYFKNRWSLQMVFLLVDGRIP-PQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAKKLEEHRKVFSKY--GEYTIIPTSSVTGEGISELLDLISTLLK... 192
18 -21.600d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  19..........VAFAGRSNAGKSSALNTLTN--------------------------------QKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYQRALGEYLEKRQSLQGLVVLMDIRHP-LKDLDQQMIEWAVDSNIA-VLVLLTKADKLASGARKAQLNMVREAVLAFN-GDVQVETFSSLKKQGVDKLRQKLDTWFS... 188
19 -21.600d5x4ba_ c.37.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 224308]}  ali model 3D-neighbors follow..  18  3........PVVAIVGRPNVGKSTIFNRIAG--ERISIVEDTPGVTRDRIYSSAEW----------------------------LNYDFNLIDTGGLAQIRQQAEIAMDEADVIIFMVNGREGV----TAADEEVAKIL--KPVVLAVNKLDNTEMRANIYDFYSLG----------GEPYPISGTHGLGLGDLLDAVAEHF.... 162
20 -21.100d3w5ja1 c.37.1.0 (A:2-197) automated matches {Gallionella capsiferriformans [TaxId: 395494]}  ali model 3D-neighbors follow..  17  2.........RIALLGMPNTGKSTLFNRMTGGAAR--------GITVELLSGKILL----------------------------GADMVEIIDLPGDEQVVRHFLHD-NVPDLALVILNATQ------ERQMSLLLQLKQLNNIVVLLNMSDEAKQYGITIDSRKMSELL------QIPVFQLSGKYGTGYQEALQAVTRALRYP. 163
21 -21.000d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  26..........IALAGRSNVGKSSFINSLIN--------------------------------RKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGRMIETYITTREELKAVVQIVDLRHA-PSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQTLNID--PEDELILFSSETKKGKDEAWGAIKKMIN... 194
22 -20.100d3a1wa1 c.37.1.0 (A:17-177) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  21  1........VKVALAGCPNVGKTSLFNALTGT---KQYVANWPGVTVEKKEGVFTY----------------------------KGYTINLIDLPG-DEKIARDYLLKGDADLVILVADSVN------EQSLYLLLEILEMEKVILAMTAIDEAKKTGMKIDRYELQKHL------GIPVVFTSSVTGEGLEELKEKIVEYAQ... 161
23 -18.100d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  20  2........ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVS-----------------------------EEERFTLADIPG-------IIEGASETRVLLYVLDAADEPLKT-RKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-------EGLAVLPVSALTGAGLPALKEALHALVR... 168
24 -17.900d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  14  1.....SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-----------------------------------DYDGSGVTLVDFPGHVKLSDYLKTRAKFVKGLIFMVSTVDPKKLTTTAEFLDILSITESSCILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL........ 168
25 -17.200d1zd9a1 c.37.1.8 (A:17-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1.....KEEMELTLVGLQYSGKTTFVNVIA-------SGQFNEDMIPTVGF--------------------------NMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLPQLQGIPVLVLGNKRDLPGALDEKELIEKMN--LSAIQDREICCYSISCKEKDNIDITLQWLIQHSK... 165
26 -16.600d2zeja_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1........MKLMIVGNTGSGKTTLLQQLM---KTKKSDLGMQSATVGIDVKDWPIQIRDKRKRD----------------------VLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPLFNIKARASSSPVILVTHLDVSDEKQRKACMSKITKELRGFPAIRDYHFVNATEESDALAKLRKTIINES.... 174
27 -15.900d2gj8a_ c.37.1.8 (A:) automated matches {Escherichia coli [TaxId: 469008]}  ali model 3D-neighbors follow..  13  2........MKVVIAGRPNAGKSSLLNALAG---------REAAIVTDIA-----------------GTTRDVLR----EHIHIDGMPLHIIDTAGLRE-IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-LPITVVRNKADITGETLGMSE------------VNGHALIRLSARTGEGVDVLRNHLKQSM.... 161
28 -15.800d1yrba2 c.37.1.10 (A:1-245) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  15  1........MIVVFVGTAGSGKTTLTGEFG-----RYLEDNYKVAYVNLDTGVKELPYEPSIDVREDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRTTIPALNKVDLLSEEMQGLMAYKMCSMMTEVL-PPVRVLYLSAKTREGFEDLETLAYEHYCT.. 243
29 -15.700d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}  ali model 3D-neighbors follow..  14  11.....KKTGKLVFLGLDNAGKTTLLHML----------------------------------KDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLETIANVPILILGNKIDRPEAISEERLREMFSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID... 186
30 -15.500d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  2.........AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--------------------------------KVNNNRGNSLTLIDLPGHESLRFQLLD-KSSARAVVFVVDSAA---VKDVAEFLQVLIDSMALKLLIACNKQDIAMAKSAKLIQQQLEKELNT--LRVTRSAAPSTLDSSSTAP............. 158
31 -15.100d1j2ia1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1........MRILMVGLDAAGKTTILYKL----------------------------------KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMDELRDAVLLVFANKQDLPNAMNAAEITDKLG--LHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR... 161
32 -14.600d3gj0a1 c.37.1.8 (A:2-207) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  2AQGEPQVQFKLVLVGDGGTGKTTFVKRHL---TGEFEKKYVATLGVEVHPLVFHT--------------------------NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCNKVDIKDRKVKAKSIVFHRK-------KNLQYYDISAKSNYNFEKPFLWLARKL.... 167
33 -14.400d4basa_ c.37.1.0 (A:) automated matches {Trypanosoma brucei [TaxId: 185431]}  ali model 3D-neighbors follow..  14  1......TKLQVVMCGLDNSGKTTIINQV------KPAQSSSKHITATVGY--------------------------NVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIAMLKHEDIRRFLFFANKMDAAGAKTAAELVEIL-DLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS... 173
34 -14.200d5c1ta2 c.37.1.0 (A:177-335) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  13  5........IRMLMVGDQNVGKTTFIRKFA--LQDPTGHDFMNAITTRF-------------------------------EMEKIKYEIIMIDWGFYNKLLQTNPAISRTIEAILIVYDITNEESFQNIHRKYYPLINNKFSDVAGVIYKTDLEAQRKIT--MGDALTLADWL---GYKYVEMSSKDTEDHSSIIKALAH...... 159
35 -14.100d4lv5b_ c.37.1.8 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  53....DSSVLNVAVTGETGSGKSSFINTLRGI---------------------------GNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS--NTYLEKMKFYEYDFFIIISATRF----KKNDIDIAKAI--KEFYFVRTKVDSDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNHYDFPVLMDKLISDLP... 239
36 -13.900d3q72a_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  3........YKVLLLGAPGVGKSALARIFGGVEAEAAGHTYDRSIVVD-----------------------------------GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDIILVGNKSDLVRSREVS--VDEGRACAVVF---DCKFIETSAALHHNVQALFEGVVRQIR... 163
37 -13.400d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  7........FKLVLLGESAVGKSSLVLRFV-----------------------------KGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALNKADLANKRAVD--FQEAQSYADDN---SLLFMETSAKTSMNVNEIFMAIAKKL.... 167
38 -13.400d3defa_ c.37.1.8 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  13  26..QKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM------------------------------VSRTMGGFTINIIDTPGNHQALELIFLVNRTIDVLLYVDRLDVYAVDELDKQVVAITQTFG-CKTLLVLTHAQFSPPD................................................. 162
39 -13.200d2hxsa1 c.37.1.0 (A:11-184) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3........LKIVVLGDGASGKTSLTTCFA---QETFGKQYKQTIGLDFFLRRITLP-------------------------GNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESVALVGNKIDLEHMRTIK--PEKHLRFCQE---NGFSSHFVSAKTGDSVFLCFQKVAAEI.... 167
40 -12.900d1z2aa_ c.37.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  3........IKMVVVGNGAVGKSSMIQRYC---KGIFTKDYKKTIGVDFLERQIQV--------------------------NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVNKIDLLDDSCIK--NEEAEGLAKRL---KLRFYRTSVKEDLNVSEVFKYLAEKH.... 162
41 -12.700d4d0ga_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  5........FKYIIIGDMGVGKSCLLHQFT---EKKFMADCPHTIGVEFGTRIIEV--------------------------SGQKIKLQIWDTAGLERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILNKADLEAQRDVT--YEEAKQFAEE---NGLLFLEASAKTGENVEDAFLEAAKKI.... 165
42 -12.700d3x1xa_ c.37.1.8 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  2......REYKLVVLGSGGVGKSALTGIFVEKYDPTIEDSYRKQVEVD-----------------------------------AQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQEQILRVKDTDDVPMILVGNKCDLEDERVVG--KEQGQNLARQ--WSNCAFLESSAKSKINVNEIFYDLVRQIN... 166
43 -12.700d2yc4c_ c.37.1.0 (C:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  16  11........CKVAVVGEATVGKSALISMFTS-KGSKFLKDYAMTSGVEVVVAPVTI------------------------PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRAVLVANKTDL-PPQRHQVRLDMAQDWATT---NTLDFFDVSAPPGKDADAPFLSIATTF.... 180
44 -12.600d2p5sa_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  2........YKIVLAGDAAVGKSSFLMRLC---KNEFRENISATLGVDFQMKTLIV--------------------------DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLNKADIRDTAATEGQKCVPGHFGEKLAMTGALFCETSAKDGSNIVEAVLHLAREV.... 168
45 -12.500d3seaa_ c.37.1.8 (A:) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1....QSKSRKIAILGYRSVGKSSLTGQFVDSADPTIENTFTKLITVN-----------------------------------GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVHGKLLDMVGKVQIPIMLNKKDLHMERVIS--YEEGKALAESW---NAAFLESSAKENQTAVDVFRRIILEAE... 166
46 -12.500d4cyma_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  5........FKVLVIGELGVGKTSIIKRYV---HQLFSQHYRATIGVDFALKVLNW--------------------------SRTLVRLQLWDIAGLERFGNMTRVYYKEAVGAFVVFDISRSSTKSDLDSKVHLPNGSPIPAVLLA-NKCDQNKDSSQS--PSQVDQFCKEHGF--AGWFETSAKDNINIEEAARFLVEKI.... 171
47 -12.400d2iwra_ c.37.1.8 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3...RSIPELRLGVLGDARSGKSSLIHRFLTVLEKTESEQYKKEMLVD-----------------------------------GQTHLVLIREEAGAPDA-------SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGLALVGTQDRISASSPRVVGDARARALCAD--MKRCSYYETCATYGLNVDRVFQEVAQKV.... 167
48 -12.200d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  15  8..........................................................................................................ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY---DVYLTSSKDQDSLADIIPHFQ....... 96
49 -12.100d4rkfa_ c.37.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  13  7........FKLLIIGNSSVGKTSFLFRYA---DDSFTSAFVSTVGIDFKVKTVFR--------------------------HDKRVKLQIWDTAGLERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILNKCDMEDQRVIS--FERGRQLADQL---GVEFFETSAKENVNVKAVFERLVDII.... 167
50 -11.900d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  7........FKVILLGDGGVGKSSLMNRYV---TNKFDTQLFHTIGVEFLNKDLEV--------------------------DGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKFVILGNKIDISERQVSTEEAQAWCR-----DNGDYPYFETSAKDATNVAAAFEEAVRRV.... 171
51 -10.700d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  3........FKIIVIGDSNVGKTCLTYRFC---AGRFPDRTEATIGVDFRERAVDI--------------------------DGERIKIQLWDTAGQERFRKSMVQH-RNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRINKCDLRSAIQVP--TDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA....... 165
52 -10.400d2qm8a_ c.37.1.10 (A:) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}  ali model 3D-neighbors follow..  16  46.LPQTGRAIRVGITGVPGVGKSTTIDALVAVLAVDPSSTRTGGSILG------KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETV-GVGQTDFFLVLMLPGAG-------DELQGIKK-GIFELMIAVNKADDGDGERRASAAASEYRAALHILTPPPPVVTISGLHGKGLDSLWSRIEDHRS... 257
53 -10.400d5ee0a1 c.37.1.0 (A:16-303) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  15  3.LGRFSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPF---CTIDPNEARVYVPDERFDWLCQLYKPKSEVSA-----------YLEINDIAG-EGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKAHLEDG................ 183
54 -10.200d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1...GSPQAIKCVVVGDGAVGKTCLLISYT------------------------------TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----PASFENVRAKWYPEVRHIILVGTKLDL-DKDTIEKLKEKKLTPITAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP. 181
55 -10.200d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  19  1........MEIGVVGKPNVGKSTFFSAATLVDVEIANYPF---TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIP----VKMVDVAG-RGLGNKFLDDLRMASALIHVVDATGKT-SQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVREEEK-------RGYIVIPTSAAAELTLRKAAKA......... 263
56 -10.100d2dbya1 c.37.1.0 (A:1-283) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  15  2........LAVGIVGLPNVGKSTLFNALTRANAL----------AANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG-EGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKE.......................................... 153
57 -10.100d3c5ca_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  2.......EVNLAILGRRGAGKSALTKRFISEYDPNLEDTYSSEETVD-----------------------------------HQPVHLRVMDTADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETALLLGNKLDMAQYRQVT--KAEGVALAGRF---GCLFFEVSACLDEHVQHVFHEAVREAR... 166
58 -9.780d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  11  1........MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIP----ILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA----TIPIRDVHPLVKEIRRL------PGAVLIELTPENRDVIEDILSLLER...... 178
59 -9.550d4ixna1 c.37.1.10 (A:1-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  9............LTGFLGAGKTTLLRHIVSVDDQLIGDRATQIKTLTNGCIAASRSNE---------LEDALLDLLDNLDKGNIQFDRLVIECTGMADFSHEVLCQRYLLDGVIALVDAVHA--DEQMNQFTIAQSQVGYADRIL-LTKTDVAGE--AEKLHERLARI..................................... 176
60 -9.500d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  29..........IAVVGGQSAGKSSVLENFVGRD---LVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKYSPHVLNLTLVDLPG-EFQIRDMLMQFVTKENCLIVSPANSDLANSDALKIAKEVDPQG-QRTIGVITKLDLMDE.................................................. 207
61 -9.470d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  1......EPFLIGVSGGTASGKSSVCAKIV-LGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEIT-VQIPVYDFVSHSRKEETVTVYPAVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG.. 213
62 -9.310d5c1ta1 c.37.1.0 (A:21-176) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  18  1........IRLLVVGSSGVGKTTLCDCFFESHQSQGEETREKHVQID-----------------------------------NDFIRISISDIVGKQSF-YACDNPYDGYDAILVMYDITE----LKSFTDLKTMWLPDIFLIIIIGNKKDQEIDRIIT--RKEAEQFAQDR---LCQFYEISTKDD-SCQLLFDCISRDF.... 154
63 -9.200d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  13  10..........VAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG------DEQAMQYSDYPQMALGHQRYIDYAVRHSHKIAFIDT-GKAHPFLDSMIKEYPFDVTILL--VDDGLRSLGSQKQKKLLDKYKVPYIEIESPSYL----DRYNQVKAVIEKVLNEEEISEL............................ 190
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.