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Query: d4tv9f2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTGQKTSQPTSIFIKLLast
1 -122.000d4tv9f2 d.142.1.10 (F:77-378) Tubulin tyrosine ligase (TTL) C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors  100  1LVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNIYLYREGVLRTSSEPYNSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEPAISTKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELCQGIVDVAISSVFPLADTGQKTSQPTSIFIKL 302
2 -18.400d3vpda2 d.142.1.7 (A:89-281) automated matches {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  39.......................................................................VLKPVIGSWGRLLAKVTDRAAAEALLEHQHQLFYIQEYVEKP--------GRDIRVFVVGERAIA-------------------------------AIYRRSAHWITNTARGGQAENCPLT----------------EEIARLSVGAAEAVG------------GGVVAVDLFESER-GLLVNEVNHTMESVHTTGVDIPGEILRYAWEVA.................... 191
3 -18.300d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  54.......................................................................VVKIGHAHSGMGKVKVENFQDIASVVALTQTYATAEPFIDA---------KYDIRVQKIGNNYKAY------MRTSISGNWK-----------TNTG-----------------------------SAMLEQIAMSDRYKLWVDACSEMFGG------------LDICAVKAVHGKDGKDYIFEVMDCSPLIGEHQVEDRQLITDLVISKM.................... 201
4 -15.500d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  31.......................................................................IVKPHGAKGGKGYFLAKDPEDFWRKAEEDLKNIQIQEYVL--------GVPVYPHYFY-VREELELMSIDRRYESNVDAIGRIPAKDQLEFDMDITYTVIGNIP-------------------------IVLRESLLMDVIEAGERVVKAAEELMGGLWGPFC------LEGVFTPDLEFVVFEISAR-STGRRIAMEIREAIENDMLEKVL................... 234
5 -14.500d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}  ali model 3D-neighbors follow..  30.......................................................................FVRIEGPRGGSGHFIVEGSELEERLSTLEEP-YRVERFIP--------GVYLYVHFFYSPILERLELLGVDERVLIADGNARWPVKPLPYTIVGNRAIA----------------------------------------LRESLLPQLYDYGLAFVRTMRELEPPGVIGLHFAYDGSFK--AIGIASR-SMGRRIARELRLAEEEDRLEEVV................... 212
6 -13.400d4c5ca2 d.142.1.1 (A:97-306) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  15  46.......................................................................IVKPSREGSSVGMSKVVAENALQDALRQHDEEVLIEKWLS--------GPEFTVAILIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA----------------------------------------------SQEANLQALVLKAWTTL-----------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSPMAARQAGMSFSQLVVRILELAD............... 210
7 -13.000d4fu0a2 d.142.1.0 (A:139-348) automated matches {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  11  43.......................................................................FIKPVRAGSSFGITKVIEKQELDAAIELADTEVIVEETING-----------EVGCAVLGIDELIVGRVDEIELSSGFFDYTEKYTLKSSKIYMPARID----------------------------------AEAEKRIQEAAVTIYKAL-----------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSH--SQMLDKLIGLYV....................... 210
8 -12.200d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}  ali model 3D-neighbors follow..  10  44.......................................................................FVKAANQGSSVGISRVTNAEEYTEALSDSDYKVLIEEAVNGA----------ELEVGVIGNDQPLVSEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFQ------------------------------AQLSPEVTKEVKQMALDAYKVL-----------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNKRLWDYSDINNAKLVDMLIDYGFEDFAQNKK....... 226
9 -12.000d2zdha2 d.142.1.0 (A:115-319) automated matches {Thermus thermophilus [TaxId: 300852]}  ali model 3D-neighbors follow..  13  37.......................................................................FVKPANTGSSVGISRVERFQDLEAALALADEKAVVEKALSPV----------ELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLD----------------------------------PGTQETVQELALKAYKVL-----------GVRGMARVDFFLAEG-ELYLNELNTIPGFTPT--PELLRRLVELALT...................... 205
10 -12.000d3r23a1 d.142.1.0 (A:94-303) automated matches {Bacillus anthracis [TaxId: 198094]}  ali model 3D-neighbors follow..  16  41.......................................................................VVKPNSGGSSVGVKIVYDKDELISMLEEWDSEVVIEKYIK-------------------------------------GEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDASTIEEVI-----------ELPAELKERVNKASLACYKAL-----------KCSVYARVDMMVKDG-IPYVMEVNTLPGMTQPKSADAAGIHYSKLLDMIIETSLRVRKEE......... 209
11 -11.900d3tqta2 d.142.1.0 (A:140-371) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  16  45.......................................................................FVKAVSLGSSVATLPVKTETEFTKAVKEVDDRLMVEPRIRG-----------EIECAVLGNGAPKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSV---------------------------------DLSESVTKQIQQIAIDAFKMV-----------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNSMYPKMWENLLDQLIELAIDRHQEQQKLIRC....... 225
12 -11.800d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  36.......................................................................ILKPLDGMGGASIFRVKEGDPNLGVIEHGTRYCMAQNYLPAI-------KDGDKRVLVVDGEPVPYCLAR----------------------------IPQGGETRGNLAAGGRGEPRPLT----------------ESDWKIARQIGPTLKEK----------LIFVGLDIIGD---RLTEINVTSPTCIEAEFPVSITGMLMDAIEARL.................... 191
13 -9.370d2w70a2 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  43.......................................................................IIKASGGGGGRGMRVVRGDAELAQSISMTNDMVYMEKYLENP-------RHVEIQVL--------------------------ADGQGNAIYLRDCSMQRRH------------------QKVVEEAPAPGITPELRRYIGERCAKACVDIG------------YRGAGFEFLFENG-EFYFIEMNTRIQVEHPVTEMITGDLIKEQLRIA.................... 202

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205