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Query: d4wera1 e.52.1.0 (A:1-297) automated matches {Enterococcus faecalis [TaxId: 226185]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDSVFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTSALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLSLDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLKGVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLKILPKHLTVYCGEELast
1 -95.100d4wera1 e.52.1.0 (A:1-297) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors  100  1MKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQFAREAAESHFDSVFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLARALNLPMDPEEAIQQLDLEKTSALDVGKINDDYFMNVVAIGTIPESINDVDVEQKTKLGKLAYFISGAKHLANAQTYPFHLSLDQKEQTIESSTVLVGLTNSIGGFETLLPEAQVDDGKLHLVYLKDQSLWDAVKAVPDLLKGVDQSTDNLVYLTFKEGTISLENQEELTTNVDGDEGAALPITLKILPKHLTVYCGEE 297
2 -91.100d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  32  2RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAK--AINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPND 296
3 -87.800d3s40a_ e.52.1.0 (A:) automated matches {Bacillus anthracis [TaxId: 260799]}  ali model 3D-neighbors follow..  31  4FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLITKEHVKPVDVAKANGQHFLNFWGIGLVSEVSNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITYDGQVYEDEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKL-FEDSNENDIFHVKAK--SIHIETEEEKEVDTDGESSLHTPCQIELLQGHFTMIYNPA 296
4 -81.300d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  2..ASLLILNGKSTDNLP---LREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEDIPALGILPLGTANDFATSVGIPEALDKALKLAIAGDAIAIDMAQVNKTCFINMATGGFGTRITTETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGDEILPALV----STLKSDEDNPNIIEGASS--WFDIQAPHDITFNLDGEPLSGQNFHIEILPAALRCRLPPD 290
5 -9.060d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13  1.RSVLLVVHT--GRDEATETARRVEKVLGDNKIALRVLSAEAVEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASI-PVLGV--LGRIGFLAEA---AEAIDAVLEHVVAQD-------RVEDRLTLDV-----------VVRQGGRIVNRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHAL-------------FGRPMVTSPEATIAIEIEADHDALVFCDGRREMLIPLEVTRCVTSVKWARLDS 282
6 -7.300d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  9  8.................................RQHVDAADDDGGTTSITATVKINGVETEISGSGNGPLAAFVHALADVGFDVAV-AMSAGDDAQAAAYVEASVTASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSAVNRAA......................................................................................................................................... 152
7 -7.210d1z0sa_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  2..RAAVVYKT-------DGHVKRIEEALKRLEVEVELFNQPSE----------ELENFDFIVSVGGDGTILRILQKLKRCPPIFGINTGRVGLLTHASPE-NFEVELKKAVEKFEVERFPRVSCSAMPDVLALNEI----------------------------AVLSRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRF-------------GWKPYVVSMERKIEVIA---EKAIVVADGQKSVDFDGEITIEKSEFPAVF... 231
8 -7.190d5br4a1 e.22.1.2 (A:1-383) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  31YQKALIVTDKTL---VQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLNSGADYLIAIGG-GSPQDTCKAIG-NKPSVPILAIPAGTAAEVTI-NYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGCAATGVDA-LTHAIEGYITRGAWALTLHIKAIEIIAGALRGSVAGDKDAGEEMALGQYVAVGLGLVHGMAHPLGAFYNTPHGVANAILL.......................................................................... 285
9 -6.940d1vlja1 e.22.1.2 (A:1-395) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  10  32.RKVLFLYG--GGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVKEKVEAVLGVGG-GSVVDSAKAVAQIEKALPIFDVLSATGTEMNGN-AVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLVYGAVDA-ISHILEYYFDGSSPEISIAEGTIRTIMKMTERLIE---KPDDYEARANLAWSATIALNG............................................................................................... 254
10 -6.840d1j5rb1 e.22.1.2 (B:2-359) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  29.RALVVTGKSSS---KKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVNDSFDFVVGLGG-GSPMDFAKAVAKVKHWLPVVEIPAGTGSEVTPYSILTPEGNKRGCTLMFPVYAFLDPRYTYSMSDELTLSTGVDA-LSHAVEGYLSRKSTPPSLAIEAMKIIHRNLPKAIEGNREARKKMFVASCLATGTTLAHALGYPLTTEKGIKHGKATGMVL.......................................................................... 277
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.