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Query: d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EDILERSKSTNEIIWGVKYDTRLFGMMDIESRTVQGFDVDIAKAITKKILGDNGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQIKSVDDLNASTTVLAVKGSTSAANIRQHAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETEGKVELast
1 -107.000d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors  100  1EDILERSKSTNEIIWGVKYDTRLFGMMDIESRTVQGFDVDIAKAITKKILGDNGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSQIKSVDDLNASTTVLAVKGSTSAANIRQHAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYELVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETEGKVE 241
2 -91.800d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  29  2.NSLDKIKQNGVVRIGVFGDKPPFGYVD-EKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKT-LLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVK 240
3 -91.400d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  36  1.GKLESIKSKGQLIVGVKNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGAN-IGVAQAATTKKAIGEAAKDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDK--SEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG......... 230
4 -85.100d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  3GDNWSKYQSNKSITIGFDSTFVPMGFAQ-KDGSYAGFDIDLATAVFEKY---GITVNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSGITTAKDMTGKT-LGAQAGSSGYADFEANVANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVYNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVATK.. 246
5 -84.400d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  34  1..AIDEIKSRGYLLVGLSADFPPFEFVD-ENGNIVGFDVDLAKEIARRL---GVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSDPKTYEDLVGKT-VAVQIGTTGDIEVSK-YDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLVISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS........ 226
6 -84.300d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  27  2VRSFEEIKRSGEIRIGTEGAFPPFNYFD-ERNQLTGFEVDLGNAIAERL---GLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGG-PRTAKDLQGKV-VGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKNTLQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK.. 236
7 -84.200d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  25  1.....ASVSARTLHFGTSATYAPYEFVD-ADNKIVGFDIDVANAVCKEM---QAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGAYHTFADLKGKK-VGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT........ 228
8 -84.100d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  26  1.........SLNLTIGTSKFNPPFEVWSGNNSSLYGFDIDLMQEICRRL---HATCTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKISTFDDLHGKK-IGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF......... 228
9 -82.600d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  30  1.........RGELRVGLEPGYLPFEMKD-KKGNVIGFDVDLAREMAKAM---GVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEVKSYKDLDKPETLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTK..... 228
10 -82.500d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  25  1...IEAIKSKGKLVVALNPDFAPFEYQKVGKNQIVGSDIELAKAIATEL---GVELELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDTYQSVNDLAQKK-VGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASIE.... 237
11 -82.300d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  22  1.DNPLGLIDPTTISVGTMGDAKPYAFTT-ADGNFTGFDIELFLNVAGRLGFKKEQVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAG-ITDAAGLKGKR-LGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPA.. 236
12 -81.600d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  20  1.....ATPKKDVYTIASDNSFAPFEFQN-DDKQFTGIDVDLLNAIAKNQ---GFKLKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDDIKSWKDLKGKT-LGAKNGTASFDYLNAHAKGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFATPIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESDA..... 230
13 -80.700d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  32  2...........ELVVGTDTSFMPFEFKQ--GDKYVGFDLDLWAEIAKGA---GWTYKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTIKSIDDLNGKV-IAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKVKVAGAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSEP..... 222
14 -80.600d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  21  1ESKLDQILSSGELKVGTTGDWDPMAMKDPATNKYKGFDIDVMQELAKDM---GVKITFVPTEWKTIVSGITAGRYDISTS-VTKTPKRAEVAGFTDSYYKYGTVPLVLKKNKYSTWKSLNNKDTIATTLGTSQEEKAKEFFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL..... 236
15 -80.500d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  1.TGWEQIKDKGKIVVATSGTLYPTSYHDTDSDKLTGYEVEVVREAAKRL---GLKVEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDSGIKTLKDLKGKK-AAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSK.. 241
16 -79.500d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  23  4GSLIERINNKGTVTVGTEGTYAPFTYHD-KDGKLTGYDVEVTRAVAEKL---GVKVEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGVK-TAQSLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNVKIVWSAPADEKSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ.. 240
17 -77.900d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  20  1..........EKFIVGTNATYPPFEFVD-KRGEVVGFDIDLAREISNKL---GKTLDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLFKGENKHPLPLTQYRS-VAVQTGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN...... 224
18 -77.300d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  25  1.......ALPQTVRIGTDTTYAPFSSKD-AKGEFIGFDIDLGNEMCKRM---QVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPQPTLESLKGKH-VGVLQGSTQEAYANDNWKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPA-SVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD.. 238
19 -77.200d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  30  2.......ATKKKVVVGTDAAFAPFEYMQ--KGKIVGFDVDLLDAVMKAA---GLDYELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDLKGKT-IGVQNATTGQEAAEKLFGKPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQPKNFASEYYGMIFPKNS-ELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLD.. 231
20 -77.100d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  18  2.......DRHRTIVVGGDRDYPPYEFID-QNGKPAGYNVELTRAIAEVM---GMTVEFRLGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSPAAGLEDLRGRK-VALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVLEP.... 228
21 -76.200d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  24  1...........TVRMGTEGAYPPYNFIN-DAGEVDGFERELGDELCKRA---GLTCEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG----ADLSGI--VAAQTATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAA.... 216
22 -76.000d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  29  1...........PLLVATR-VIPPFVLSN--KGELSGFSIDLWRSIATQIGIESKLIE--YSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLEDIRSIDDLPGKV-VATTAGSTAATYLREH--HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKVEIVGSILREESYGIILPNNS-PYRKPINQALLNLKENGTYQSLYDKWFDP....... 220
23 -75.600d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  1......IVEGRTLNVAVSPASPPMLFKS-ADGKLQGIDLELFSSYCQSR---HCKLNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKLNNLNELNKYS-IGYPRGMAYSDLIKNDYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMIESRYVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM......... 228
24 -75.400d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  18  1.....ARLKGITLRIGVIESVPFTIVANRNTTKLTGYVLDLIEYLRDKMGFVDVQLAPPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTLIDGMDDLKNGNRIGIRIGTAGEDYYLREISSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYNLTLVGEDFDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKACP... 246
25 -75.400d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  23  3...........SITIATEGSYAPYNFKD-AGGKLIGFDIDLGNDLCKRM---NIECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLKFTKIFEGVK-FGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDASP... 254
26 -74.400d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  21  2..........QTITVGTGTQFPNVCFLD-ENGKLTGYDVELVKEIDKRL--PGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTDSNNSINSTKDLAGKR-VITSATSNGALVLKKINEEEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKE.. 234
27 -74.100d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  20  1ESRLDRILESGVLRVATTGDYKPFSYRT-EEGGYAGFDVDMAQRLAESL---GAKLVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSARFQTLEQIDQPVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL......... 232
28 -72.800d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  17  2...........TVTLATVGTTNPFSYEK--KGKLTGYDIEVAKEVFKAS--DKYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSDIKSYNDIAGHS-TQVVQGNTTVPMLQKFNKNKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGNLKVIDLPSDQKPYYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYLPDKK 235
29 -72.500d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  21  1............LKVGVV-GNPPFVFYGEKNAAFTGISLDVWRAVAESQKWNSEYVR--QNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTATFRSVGDLKNKE-VAVVRDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLEVTEIRVSLEPYGFVLKENS-PLQKTINVEMLNLLYSRVIAEFTERWLG........ 221
30 -69.500d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  20  2ENKLEELKEQGFARIAI-ANEPPFTAVG-ADGKVSGAAPDVAREIFKRLGVA--DVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNSYKDIADNPDAK-IGAPGGGTEEKLALEAVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDVEVLAPVEGAPVYGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAM.. 245
31 -57.000d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  41....SSMLDRLFSSLHSSNDTVPIKFKK----CCYGYCIDLLEQLAEDMNGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELSGIHDPKLHRFGTVRESSAEDYVRQSHEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDAKLLTVGKPFAIEGYGIGLPPNSP-LTSNISELISQYKSHGFMDVLHDKWYKVV...... 288
32 -47.900d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  17  6AREQQWMADHPVVKVAVLNLFAPFTLFR-TDEQFGGISAAVLQLLQLRT---GLDFEIIGVTVEELIAKLRSGEADMA-GALFVNSARESFLSFSRPYVRNGMVIVTRQDPDPVDADHLDGRT-VALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYGKLRIASADLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW.......... 234
33 -44.900d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  48............................NVKKCCKGFCIDILKKLSRTVKTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRRFGTVPNGSTERNIRNNYPYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTGI...... 277
34 -37.100d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  21  56.............................VPQCCYGFCIDLLIKLARTM---NFTYEVHLVAWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQ...... 285
35 -36.900d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  15  2........IGRHLRLGSVEE-QPFMFFATENDCWSGMVNDMVVKLSEDL---GFTYEYIQPEWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGGTTLNQVLELLDQDKYGVIGSRHPETLLKTHRDSRYSRLVDKDLNHAIETLRGGLFVFIDEGPVLAHNLISDCDVFSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWS......... 245
36 -34.100d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  20  2...........RYTVATRVG-KPYFSWREENERFEGYAVDLIYMLAQEC---KFDFNFEPVRWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKVQFGTIRGGATSVKMLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNAD-FRSNLSVGILRLSERGELFKLRNKWFNS....... 255
37 -31.200d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  23  1.........GGVVLRVVTVLEEPFVMVSENPKKYQGFSIDVLDALSNYL---GFNYEIYVATWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFVGNTVADRGYGIALQHGSP-YRDVFSQRILELQQSGDMDILKHKWWPKN...... 260
38 -30.600d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  25  1.........NKTVVVTTILE-SPYVMMKKNNERYEGYCVDLAAEIAKHC---GFKYKLTIVGWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEITLDSGSTKEFFRRSKIAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWWYDK...... 256
39 -16.400d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  10  37................................QFDGIPFYYAHM-----------------GADIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKG------ESGNVKR-VGLDSRSADQKIMTDVFFGDSDVER-SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATVLTRVDDYPMQQLLRAVVDKHALLAHQQRVVSG........... 222
40 -12.600d2vd3a1 c.94.1.0 (A:-1-212) automated matches {Methanobacterium thermoautotrophicum [TaxId: 187420]}  ali model 3D-neighbors follow..  14  26..................................AGVGLKDTVNRKLFSKTQHPQIEVMFSRAADIPEFVADGAADLGITGYDLIVERGSDVEEDLKYGRASLVLAAPEDSTIRGPEDIPRGAVIATEFPGITENYLREHGIDAEVVELTGSTEIAPFI--GVADLIT--DLSSTGTTLRMNHLRVIDTILESSVKLIANRESYATKSGIIEELRTGIRG..................... 209
41 -12.300d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  9..............................SGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGNINAINAGEFEMALCIPAFEGKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLAIRVSASQGIQLMQDKRADALF......................................................................... 169
42 -11.700d3jv9a_ c.94.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  12  1.........EGAFKLGLIFTVAPYLL-------------KLIVSLRRTA--PKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIV----TEPLYDEPFFVIVPKGHSFESPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQ-GSSINTIRHMVASGLAISVLPATALTENDHMLFSIIPFEGTPPSRRVVLAYRRNFPKALSAMKAAIMQSQLHG................... 211
43 -11.400d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  15  11..............................TGSMTGVYYPIGGSICRFIADNKIICSISSTTGSYNLNSIRYSNMDISIVQSDLEMLPMDNLRMLASLHKEYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWMAELKSSEQAQALCDNKIDVMV......................................................................... 173
44 -11.400d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  10  1.........TGRLNIAVLPTIAPY---------------RVFPIWKKEL--AGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLE----DDLLYYEEFLGYVSRCEPLFRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYEQLIGLLRSAVPSDMHKLQTGQ............... 216
45 -11.200d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  4.........SGPLHIGLIPTVGPYLL-------------HIIPMLHQTF--PKLEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFIEV----PLFDEPMLLAIYEDHPWANMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPAIKPEPRRTIGLVYRPGSEQLAEAIRARMDG........................ 209
46 -10.900d5b7ha1 c.94.1.0 (A:86-301) automated matches {Vibrio vulnificus [TaxId: 672]}  ali model 3D-neighbors follow..  10  12.........QGQLKLGCIPTIAPFLL-------------DLVQEINQRF--PQLNLLLREDTTTNLLTALRHGELDVLILALPVEIDGME----SRVVGQDPFKMVISRHQAGAKYDDLPDESVFLLEKEHSLTEHAVSACKLTDKEKINPFSHTLVQMVANGLGTTFIPQMAIDHGLLDNQNLVVIEPPGQQAYRDIGLVWRPSSSRSKTFNQLAEVVSE.................... 214
47 -10.400d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  3.......DTSGVLTIATTHTQARYSL-------------EVIKAFREL---PEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLV---AFPWFRWHHSLLVPHDHPLTTLESIAKWPLITYRQGITGRSRIDDAFARKGLLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVW---GLKRGQLQRNYVWRFLELCNAGLSVEDIKRQ........... 216
48 -10.100d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type protein CysB {Klebsiella aerogenes [TaxId: 28451]}  ali model 3D-neighbors follow..  10  4........DKGSLYVATTHTQARYAL-------------GVIKGFIERY--PRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLV---MLPCYHWNRSIVVTPEHPLASIEELAQYPLVTYTFGFTGRSELDTAFNRARIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTYDFIQRFAPHLTR........................ 210
49 -10.000d3oxna_ c.94.1.0 (A:) automated matches {Vibrio parahaemolyticus [TaxId: 670]}  ali model 3D-neighbors follow..  15  23.......................................FALPRIYQE--APNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLR----SEILGRVGVLCLLSKQHPLASLDDYLSHPHAMIAISDGVKALIEQALIDKPQRKMVLRAYHLEAALADTLPIIITVPADLAYLVAERYDLVVKPLPFQFTPFDYSMRCEHSPAQEWLRSVVREECSR.................... 208
50 -9.910d1z7me1 c.94.1.1 (E:1-204) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  13  22..................................ADYDVEPILNLGRELQIKTKDLQIIFGKPNDVITFLEHGIVDIGFVGKDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKYPRVTKKYFAQKQEDIEIIKLEGSVELGPVV--GLADAIV--DIVETGNTLSANGLEVIEKISDISTRMIVNKSSFKFKKDKIIEMVERLED..................... 204
51 -9.860d1nh8a1 c.94.1.1 (A:1-210) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  7............................PNKGALSEPATEILAEAGYRRRTDSNNVEFFFLRPKDIAIYVGSGELDFGITGRDLVCDSGAQVRERLALGFGSSSFRYAAPAGRNWTTADLAGMRIATAYPNLVRKDLATKGIEATVIRLDGAVEISVQL--GVADAIA--DVVGSGRTLSQHDLVAFGEPLCDSEAVLIERAGGQDQTEARDQLVARVQG..................... 205
52 -9.670d2y7pa1 c.94.1.1 (A:90-301) automated matches {Burkholderia sp. [TaxId: 233098]}  ali model 3D-neighbors follow..  9  25.......................................PLMEALAQR--APHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFF----QRRLFRHRYVCMFRKDHPSASLKQFTELEHVGVVALNTGHGEVDGLLERAGILVVPHFIAIGPILH--STDLIATVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLKYNRDPGNMWLRQLFVELFSEA................... 212
53 -9.550d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  10  25.......................................PLMNRLQHS--APGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGI-QAHDWFADRYVVVARRDHPR-TLEGYLAERHAVVTPWNEDSGVIDRLLARSGLVQLPTVLAALFLAG--STDFLLTAPRHAARALAEAAGLALYPAPFDIPPYVLRLQHVGRDAHAWMIGQLKGL....................... 211
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.