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Query: d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKKEQVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPAAYLPKLast
1 -105.000d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors  100  1DNPLGLIDPTTISVGTMGDAKPYAFTTADGNFTGFDIELFLNVAGRLGFKKEQVVFTGQEFSALMPSVANGRFDVAAAAIGTTAKRKETVDFSDGYLAGFLSVLTSEAGITDAAGLKGKRLGVVQGTLQEIYAEKNFAGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKIAVNIPSFDAPAGFVIRKGNDALRNALDKGLKEAMQDGTWKKLHEKWFPGTPMPAAYLPK 241
2 -94.900d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  27  3RSFEEIKRSGEIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLK---PRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGPRTAKDLQGKVVGVQVGTTYMEAAQKIPGIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTQVGELVFQERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK..... 236
3 -91.900d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  28  1....ASVSARTLHFGTSATYAPYEFVDADNKIVGFDIDVANAVCKEMQAE---CSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGYHTFADLKGKKVGLENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIASDPDYYGKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT........... 228
4 -89.700d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  22  4DNWSKYQSNKSITIGFDSTFVPMGFAQKDGSYAGFDIDLATAVFEKYGIT---VNWQPIDWDLKEAELTKGTIDLIWNGYSATDERREKVAFSNSYMKNEQVLVTKKSSITTAKDMTGKTLGAQAGSSGYADFEANVANKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNNVFTVGLETEAFAVGSRKEDTTLVKKINEAFSSLYKDGKFQEISQKWFGEDVATK..... 246
5 -88.500d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  26  2.........KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIE---CKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSDKFTKIFEGVKFGVQAGTSHEAFMKQMMPSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMTGGLFGKGVGVGIRKEDADLKALFDKAIDAAIADGTVQKLSQQWFGYDASP...... 254
6 -88.300d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  22  1........RGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVK---LKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLVKSYKDLDKPTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK.... 232
7 -88.300d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  31  1......ALPQTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQVK---CTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSQPTLESLKGKHVGVLQGSTQEAYANDNWKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKSVKDKKYFGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD..... 238
8 -87.800d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  19  1.........EKFIVGTNATYPPFEFVDKRGEVVGFDIDLAREISNKLGKT---LDVREFSFDALILNLKQHRIDAVITGMSITPSRLKEILMIPYYGEEIKHLVLVFKGKHPLPLTQYRSVAVQTGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSIDLPEDQWVLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNN......... 224
9 -87.800d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  23  1..IEAIKSKGKLVVALNPDFAPFEYVDGKNQIVGSDIELAKAIATELGVE---LELSPMSFDNVLASVQSGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDYQSVNDLAQKKVGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAILNFEKEQDDSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKASIEK...... 238
10 -87.600d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  24  1........SLNLTIGTSKFNPPFEVWSNNSSLYGFDIDLMQEICRRLHAT---CTFEAYIFDDLFPALKNREVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSISTFDDLHGKKIGVRKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAKLIGKKISIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYF............ 228
11 -87.100d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  27  1.AIDEIKSRGYLLVGLSADFPPFEFVDENGNIVGFDVDLAKEIARRLGVE---LKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDSPKTYEDLVGKTVAVQIGTTGDIEVSK-YDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPDLV-ISSGVLSSEQYGIAVRKEDTDLLEFINSVLRELK-KSPYDVLIEKWFS........... 226
12 -86.900d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  26  1....ATPKKDVYTIASDNSFAPFEFQNDDKQFTGIDVDLLNAIAKNQGFK---LKWNFIGFQAAVDSVQSGHADGMMSGMSITDARKQVFDYGSPYYSSNLTIATSSTDIKSWKDLKGKTLGAKNGTASFDYLNAHAKGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQKFA-TPIKPIPDGQYGFAVKKGNPELIEMFNNGLANLRANGEYDKIIDKYLESDA........ 230
13 -86.600d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  23  1.........KELVVGTDTSFMPFEFKQ-GDKYVGFDLDLWAEIAKGAGWT---YKIQPMDFAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVVAGAPVSGDKYGIGFPKGS-PLVAKVNAELARMKADGRYAKIYKKWFGSEP........ 222
14 -86.500d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  21  2NSLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAH......... 234
15 -86.000d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  25  1TGWEQIKDKGKIVVATSGTLYPTSYHDTDDKLTGYEVEVVREAAKRLGLK---VEFKEMGIDGMLTAVNSGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDIKTLKDLKGKKAAGAATTVYMEVARKYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIDIKYMPNKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADVSKKIDAD 246
16 -85.600d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  20  1.....IVEGRTLNVAVSPASPPMLFKSADGKLQGIDLELFSSYCQSRHCK---LNITEYAWDGMLGAVASGQADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHLNNLNELNKYSIGYPRGMAYSDLIKNDLSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGS-PVRDDFNLWLKE-QGPQKISGIVDSWM............ 228
17 -85.300d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  25  1..........TVRMGTEGAYPPYNFINDAGEVDGFERELGDELCKRAGLT---CEWVKNDWDSIIPNLVSGNYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATS---DGADLSGI-VAAQTATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVDDVPLGGGVGMGLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAA....... 216
18 -85.100d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  26  5SLIERINNKGTVTVGTEGTYAPFTYHDKDGKLTGYDVEVTRAVAEKLGVK---VEFKETQWDSMMAGLKAGRFDVVANQVGLTPERQATFDKSEPYSWSGAVLVAHNDSIKSIADIKGVKTAQSLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIAPADEKVGSGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKDISVQ..... 240
19 -84.700d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  27  1.....GATKKKVVVGTDAAFAPFEYMQ-KGKIVGFDVDLLDAVMKAAGLD---YELKNIGWDPLFASLQSKEVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSVKNALDLKGKTIGVQNATTGQEAAEKLFGGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVPKNFASEYYGMIFPK-NSELKAKVDEALKNVINSGKYTEIYKKWFGKEPKLDR.... 232
20 -82.500d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  21  2......DRHRTIVVGGDRDYPPYEFIDQNGKPAGYNVELTRAIAEVMGMT---VEFRLGAWSEMFSALKSGRVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSAAGLEDLRGRKVALHRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLPVARSIAAQRYGYAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGVLE........ 227
21 -82.300d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  22  2DILERSKSTNEIIWGVKYDTRLFGMMDESRTVQGFDVDIAKAITKKILGDNGKTEFVEVTSKTRIPLLKNGNIDAIIATMTITDERKKQVDFSDVYFDAGQALLVKKGSIKSVDDLNASTVLAVKGSTSAANIRQHAPDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPEYE-LVGGTFTNEPYGIAINKGQENFLKAVNQALEEMHADGTYDKIYQKWFPNETEGK..... 239
22 -81.600d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  25  2.........QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLP----KFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTSNNSINSTKDLAGKRVITSATSNGALVLKKINEEEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKEQY... 236
23 -81.600d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  21  2SKLDQILSSGELKVGTTGDWDPMAMKDATNKYKGFDIDVMQELAKDMGVK---ITFVPTEWKTIVSGITAGRYDIST-SVTKTPKRAEVAGFTDSYYKYGTVPLVLKKNYSTWKSLNNKTIATTLGTSQEEKAKEFFPLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAIVPDGEKNPAFLAMMVSKNDQVWNDYVNEWIKSKKSSGFFNKLLAKYNLKSL........ 236
24 -80.700d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  24  2SRLDRILESGVLRVATTGDYKPFSYRTEEGGYAGFDVDMAQRLAESLGAK---LVVVPTSWPNLMRDFADDRFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEFQTLEQIDGVTAIVNPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHQQPFDFAEKAYLLPR-DEAFKRYVDQWLHIAEQSGLLRQRMEHWL............ 232
25 -79.500d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  21  1....ARLKGITLRIGVIESVPFTIVANNTTKLTGYVLDLIEYLRDKMGFVADQLAPPNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILMRKGTIDGMDDLKYNRIGIRIGTAGEDYYLREISSRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYCNLTLVGEDFDKSTFGIVTPKEW-LYAKDLDVNILSLRETGILDNLKKKWFQTKACP...... 246
26 -78.900d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  21  3NKLEELKEQGFARIAI-ANEPPFTAVGADGKVSGAAPDVAREIFKRLGVA--DVVASISEYGAMIPGLQAGRHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNYKDIADNPDAKIGAPGGGTEEKLALEAVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPDGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYGFSAKAAMSTTRE 250
27 -78.900d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  22  1..........PLLVATR-VIPPFVLSN-KGELSGFSIDLWRSIATQIGIESKLIE--YSSVPELISAIKDNKVNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLEIRSIDDLPGKVVATTAGSTAATYLREH--HISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVIVGSILREESYGIILPN-NSPYRKPINQALLNLKENGTYQSLYDKWFD........... 219
28 -77.200d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  19  1.........KTVTLATVGTTNPFSY-EKKGKLTGYDIEVAKEVFKASD----DVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERANKYLYSNPTASNPLVLVVPKDSIKSYNDIAGHSTQVVQGNTTVPMLQKFNKNKLNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGNLKVIDLPSDQKPYVYFIFAQDQKDLQKFVNKRLKKLYENGTLEKLSKKYLGGSYLPDK.... 234
29 -76.300d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors follow..  23  1...........LKVGVVG-NPPFVFYGENAAFTGISLDVWRAVAESQKWNSEYVR--QNSISAGITAVAEGELDILIGPISVTPERAEGITFTQPYFSSGIGLLIPGTAFRSVGDLKNKEVAVVRDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLVTEIRVSLEPYGFVLKE-NSPLQKTINVEMLNLLYSRVIAEFTERWLG........... 221
30 -74.700d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  1GKLESIKSKGQLIVGVKNDVPHYALLDQTGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKYKSLADMKGANIGVAQAATTKKAIGEAAKDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGIVTKKDDPAFAKYVDDFVKEH--KNEIDALAKKWG............ 230
31 -56.900d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  18  39.NDSSMLDRLFSSLHSSNDTVPIKFKK---CCYGYCIDLLEQLAEDMNFDFD--AWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGPKLHHPSQGFRFGTVRESSAEDYVRQSHEYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLTVGKPFAIEGYGIGLPPNSP-LTSNISELISQYKSHGFMDVLHDKWYKVVP........ 289
32 -54.900d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  19  7REQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVD--TVEELIAKLRSGEADM-AGALFVNSARESFLSFSRPYVRNGMVIVTRQDPPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISND-ELASIISRW............. 234
33 -44.800d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  3...........LSIVTLEE-APFVIVEDKKCCKGFCIDILKKLSRTVKFTYDLYLVTNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTHDYSPPFRFGTVPNGSTERNIRNNYPYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTGYIFATTGYGIALQKGSP-WKRQIDLALLQFVGDGEMEELETLWLTGI......... 277
34 -36.900d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  13  1......LIGRHLRLGSVEE-QPFMFFATEGCWSGMVNDMVVKLSEDLGFTYEYIQPDD-EWNGMIRDLLDDKTDMIAIDLSTNSARKSAIDYSFPFMDAGIKAVVKGNQVLELLDQDKYKWGVIGSRHPETLLKTHRDSRYSRLVDKDLNHAIETLRGGLFVFIDEGPVLAHNLISDCDV-FSVGEEFQSFEYAFGLPKDSP-YKSLIDSHLLKFREEGFIDILWEKWSS........... 246
35 -35.000d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  2..........RYTVATRVG-KPYFSWRENERFEGYAVDLIYMLAQECKFDFNSYDANTDEWDGIIRQLIDNNAQIGICDLTITQARRSVVDFTVPFMQLGISILSYKGTDIGSLHDLVDQNKVQFGTIRGGATSVYFSESNDTDNKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRNCELTQIGESFGEKHYGIAVPLNAD-FRSNLSVGILRLSERGELFKLRNKWFNS.......... 255
36 -34.500d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  14  3...........LKIVTIHQ-EPFVYVKPPQCCYGFCIDLLIKLARTMNFTYEVHLVAD-EWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDL-VTTGELFFRSGFGIGMRKDSP-WKQNVSLSILKSHENGFMEDLDKTWVRYQECDS..... 289
37 -32.600d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  20  1........NKTVVVTTILE-SPYVMMKKNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSS-LGNAVNLAVLKLNEQGLLDKLKNKWWYDK......... 256
38 -32.100d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  1.......GGVVLRVVTVLE-EPFNVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPD-TWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFELESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYVGNTVADRGYGIALQHGSP-YRDVFSQRILELQQSGDMDILKHKWWPKN......... 260
39 -19.100d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  12  27..................................YEGLASGLKAQFDGIPFYYAHMRG---DIRVECLLNGVYDMAVVSYLSQNNLCIALELGPHTYVGEHQLICRKG-----ESGNVKRVGLDSRSADQKIMTDVFFGDSDVER-SYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDD--YPMQQLLRAVVDKHALLAHQQRVVSGEQEPS..... 227
40 -12.100d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  1.......AQEFITIGS-------------GSTTGVYFPVATGIAKLVNDANVGIRANARSTGG-INAINAGEFEMALAQNDIAKPVKTIRALAALYPEVVHVVARKDAGIRTVADLKGKRVVVDVGSGTEQNARQILEAYGLAIRVSASQGIQLMQDKRADALFYTVGLGASAIQQLALTTPIALVAVDLNRI--------QAIAKKYPFYVGFNIPGGTYKGVDVT.............. 224
41 -10.700d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  14  1.....MPETANIKLGY-VEAAPLIIAQEKG------------FFAKYGMTGVEVS-KQANWASARDNVTIGSQGGGIDGGQWTNGNKVPMYVLAQLITQGNGIAVAADYIKGFNKTNGRKFKAAHNVNQDFWIRYWFAAGGVDPDTDIDETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYL-DKNPKATKALLKGIMEAQQ........................ 245
42 -10.600d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  13  1.....SLNREYILIGT-------------GSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTLNSIRYSNMDISIVQSDLELPMDNLRMLASLHKEYLTIVVKKSSNISVIDDIKGKRVNISPGTGVRVAMLKLLGEKGWMAELKSSEQAQALCDNKIDVMVDVIGHPNASIQEASATCDIKFIPLDDRLI--------DDLHAKYPYYQKDIISGGLYND.................. 224
43 -9.870d3ho7a1 c.94.1.0 (A:90-308) automated matches {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  12  1........TGRLNIAVLPTIAPY---------------LLPRVFPIWKKELAGLEISEMQTSRCLASLLSGEIDMAIIASKAETEGLEDDLL---YYEEFLGYVSRCEPLFEQDVIRTTEVNPHRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVRPFGMPRPVREVRLAVRQDYEQLIGLLRSAVPSDMHKLQTGQ.................. 216
44 -9.810d4p56a_ c.94.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  11  2..........ELTLS---SWLPPTHAVVADFLMPWGEEIRKATDGRVTLRLLPKAVTNPA--GHFDAVRDGLVDVTFVSHAYYPGRFQLTKFAV-YAHGPGIAFTTSKPVKQIGDFQGLKIRVGGGMAADVAKAVGASPIAK----PAPESYELLSTGVADGVFFPAESLVSFLDSIIRHATEFPGGLYSDTHAVIINRDAARLSKQDQDTLVRLSGRHLAELAGRAWDTHDAAARKVLEG 261
45 -9.320d4n4ua1 c.94.1.0 (A:24-326) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  13  6.................YTFGPSENLANVQGMKRVMEDIEKNTGGEVKFRLRLAGSLPIQATDITQAVGNGTVRFADDGLRSQEDFDKAYAIMKPYVERPHQVIFSARKLESLADIKGQKLRVSSPEQAAFVQRAGGIPVTL----GGAEVPSALSAGTIDGALTASAGGGKIWGDMLKYNLRLPVNYFDGFYLVNKKAFE-ALSPEMQAKMRESVAR....................... 233
46 -9.290d5i7ia_ c.94.1.0 (A:) automated matches {Uncultured marine [TaxId: 56765]}  ali model 3D-neighbors follow..  12  3..........VLKFH---SFPPMPANSNAKFVKPWSEKVLAESNGEIKVEIYPAMQLGGKPPQLVDQVRDGVVDIVWTVAGYTPGRFPHLEAFE-FCHAPGKIHTKEKVIKSAADLNGMKMRGPTRVITKMLEGLGATPVGM----PVPAVAGALSKGVIDGMVVPWEIMPSFKLHELTKAHTTSRGLYTTPFLFLMNKAKESLSDEHKKVIDNNAGLALAKLAGQLWDGFEVPARKLALD 264
47 -9.220d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type activator OxyR, regulatory domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  4........SGPLHIGLIPTVGPY---------------LLPHIIPMLHQTFPKLEMYLHE-HQLLAQLDSGKLDAVILALVKESEAFIEVPL---FDEPMLLAIYEDHPWANREAVPMADLALEDGHCLRDQAMGFCFEAGADE-ATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPAIKPEPRRTIGLVYRPGSEQLAEAIRARMDG........................... 209
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.