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Query: d5u8ja2 a.4.5.0 (A:85-171) automated matches {Enterobacter cloacae [TaxId: 550]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst FCNSEFGDLKLSAAEVAVITTLLLRGAQTPGELRTRASRMHEFADMQEVEQTLDGLATREDGPYVVRLAREPGKRESRYMHLFSGEVLast
1 -58.800d5u8ja2 a.4.5.0 (A:85-171) automated matches {Enterobacter cloacae [TaxId: 550]}  ali model 3D-neighbors  100  1FCNSEFGDLKLSAAEVAVITTLLLRGAQTPGELRTRASRMHEFADMQEVEQTLDGLATREDGPYVVRLAREPGKRESRYMHLFSGEV 87
2 -48.900d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}  ali model 3D-neighbors follow..  41  1....VDKGLELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIAR---GLATLVPRQSGQREDRYMHLIGDPE 80
3 -8.780d1sfxa1 a.4.5.50 (A:1-106) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  24  13......EKLSFKPSDVRIYSLLLERGGMRVSEIARELD------SARFVRDRLKVLLKRG---FVRREIVEKGWVGYIYS....... 78
4 -7.730d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]}  ali model 3D-neighbors follow..  17  85.........PYNASQIFTITVYLSTGIQSRGRIGIDAA-LVNPVDKTVLLQALHDVVS-GSIPGLTMITPDVTQTLEEYVDAY.... 168
5 -7.300d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}  ali model 3D-neighbors follow..  14  1....MKKIPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWS-PKTIQTMLLRLIKKG-------LNHHKEGRVFVYTPNIDES. 75
6 -7.090d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  31..QQWLKPYDLNINEHHILWIAYQLNGASISEIAKFGV------HVSTAFNFSKKLEERG-------LRFSKRLNDKRNTYV..... 99
7 -7.080d2y71a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  16  1..................LIVNVINGPN-LGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQ............. 55
8 -7.010d2bv6a1 a.4.5.28 (A:6-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  18  21YSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELA------DTGTVSPLLKRMEQVD-------IKRERSEVDQREVFI..... 91
9 -6.640d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  20  17...ELAKIHGLNKSVGAVYAILYLSDPLTISDIMEELK------SKGNVSMSLKKLEELG----FVRKVWIKGERKNYYE....... 85
10 -6.610d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  1........LDMAEIKEKICDYLFNVSDSSALNLAKNIG----LTKARDINAVLIDMERQG........................... 48

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.