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Query: d5y4za1 c.37.1.14 (A:178-481) automated matches {Zika virus (strain mr 766) [TaxId: 64320]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDLast
1 -111.000d5y4za1 c.37.1.14 (A:178-481) automated matches {Zika virus (strain mr 766) [TaxId: 64320]}  ali model 3D-neighbors  100  1CFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETD 304
2 -52.200d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  59  1.....MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPP................................................................................................................................................................. 138
3 -50.400d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  45  1...............................................................................................................................................GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLDEGRKVAIKGPLRISASSAAQRRGRIGRN--PNRDGDSYYYSEPTSE 160
4 -45.700d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}  ali model 3D-neighbors follow..  20  2...PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGY----KVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGRTITTGSPITYSTYGKFLAD--GGCSGGAYDIIICDECHSTDATSILGIGTVLDQAEAGARLVVLATATP.................................................................................................................................................................. 136
5 -40.700d3kx2a2 c.37.1.19 (A:271-454) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  20  1........................................................................................................................................................TYPVELYYTPEFQRDYLDSA-HATEEAGDILLFLTGEDEIEDAVRKISLEPLSVYPLYGSLPPHQQQRIGRPGRKVVISTNIAETSLTIDIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEEAFQK 177
6 -35.200d3kx2a1 c.37.1.19 (A:1-270) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  18  104....KLYQNNQIMVFVGETGSGKTTQIPQFVLFDPHLENTQVACTQPRRVAAMSVAQRVAGEEVGY-SIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVRRPDLKIIIMSATLDAEKFQRYFNDAPLLA.................................................................................................................................................. 266
7 -35.000d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}  ali model 3D-neighbors follow..  23  1.............................................................................................................................................PGSVTVPHPNIEEVALSTTGEIPFYGKAIPLE--VIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGD---VVVVATDALMTGFTGDFDSVIDCNTCVTQTVDDPTFTIETTTLPQDAVSRTQRRGRTGR--GKPGIYRFVAPGERPSG 159
8 -21.000d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  18  28...............................................................................................................................................................................AARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALRLGHYDCLVGINLLREGLDIEVSLVAILDADKEGFLR-------------SERSLIQTIGRAARNARGEVWLY.......... 138
9 -20.100d5nt7b_ c.37.1.0 (B:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  17  18...........................................................................................................................................................................IEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQAKNGSMKVLIATSVASRGLDINIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNN-GRATSFFDPEKDRA 136
10 -19.800d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  26............CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL-TGEKSPEERSKAWARAKVIVATPQTIENDLLAG-SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYV................................................................................................................................. 199
11 -19.700d2g2jc_ c.37.1.0 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  33...................................................................................................................................................................................GQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIRDGKEKVLITTNVCARGIDVKVTIVVNFDLPVKQGEEP------------DYETYLHRIGRTGRF-GKKGLAFNMIEVDE... 146
12 -19.500d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  28...................................................................................................................................................................................NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEEYQQFKDFQRRILVATNLFGRGMDIEVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTK-GLAITFVSDENDAK 138
13 -19.300d2j0sa2 c.37.1.19 (A:244-411) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  35...................................................................................................................................................................................TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIRSGASRVLISTDVWARGLDVPVSLIINYDL------------------PNNRELYIHRIGRSGRY-GRKGVAINFVKNDDIR. 144
14 -19.200d2hjva_ c.37.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  17  27...............................................................................................................................................................................TENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVKRGEYRYLVATDVAARGIDIEISLVINYDL------------------PLEKESYVHRTGRTGR-AGNKGKAISFVTAFEKR. 140
15 -19.000d3peya2 c.37.1.0 (A:287-481) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  45...................................................................................................................................................................................GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLREGRSKVLITTNVLARGIDIPVSMVVNYDLPTLA------------NGQADPATYIHRIGRTGRF-GRKGVAISFVHDKNS.. 159
16 -18.700d2z0ma2 c.37.1.0 (A:193-331) automated matches {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  18  25...............................................................................................................................................................................ENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDILVEKVINFDA------------------PQDLRTYIHRIGRTGR-MGRKGEAITFILNEY... 132
17 -18.700d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  10  127........VNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD--KIGGGASKDDKYKNDAPVVVGTWQTVVKQPKE---FSQFGMMMNDECHLATGKSISSI-----SGLNNCMFKFGLSGSLRDGK.............................................................................................................................................................. 266
18 -18.600d4crwb_ c.37.1.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  29...................................................................................................................................................................................NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHFHDFRNGLCRNLVCTDLFTRGIDIQVNVVINFDF------------------PKLAETYLHRIGRSGRF-GHLGLAINLITYDD... 136
19 -17.700d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  158...............................................................................................................................................................................RKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENLDEFARGEFNVLVATSVGEEGLDVEVDLVV--------------------EPVPSAIRSIQRRGRTGR--HMPGRVIILMAKGTRDE 279
20 -16.700d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  80....ERWLVDKRGCIVLPTGSGKTH------MAAINELSTPTLIVVPTLALAEQWKERLGI--GEEYVGEFSGRIKELKPLTVSTYDSAYVN--AEKLGNRFMLLIFDEVHHLPAES-----YVQIAQMSIAPFRLGLTATFE................................................................................................................................................................. 206
21 -16.600d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  3........................................................................................................................................................DRPNIRYMLMEKFKPLDQLMRYVQEQRGKSIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEDDLQIVVATVAFGMGIN-NVRFVVHFDI------------------PRNIESYYQETGRAGR-DGLPAEAMLFYDPAD... 138
22 -16.100d1gkub1 c.37.1.16 (B:6-250) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  12  48...KRILRKESFAAT-APTGVGKTSFGLAMSLFL-ALKGKRCYVIFPTSLLVIQAAETIRK-RIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAI--KLLHLLGFHYDLKTEARGCLMVSTATAK................................................................................................................................................................. 210
23 -15.700d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  18  35....EKVFSGKNLLLAMPTAAGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKKIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASIKAVSCLVVDEIHLLDSEATLEILVTKMRRMNKALRVIGLSATAPN................................................................................................................................................................ 184
24 -15.600d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  10  3..................................................................................................LAKYTILAEDERVEYEKREKVYKQFLRALRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAIT--RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVDANVGV------------------IMSGSGSAREYIQRLGRILRPSKGKKEAVLY........ 192
25 -15.000d3peya1 c.37.1.0 (A:91-286) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  13  32ALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTR--DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKVIVGTPGTVLDLMRRKLQLQKIKIFVLDEAD----NMLDQQGLGDQCIRPKDTQLVLFSATFADAVRQYAKK........................................................................................................................................................ 194
26 -14.100d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  33...........................................................................................................................................................................VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKAAFHHAGLLNGQRRVVERGNIKVVVATPTLAAGVNLPARRVI-----------RSLYRFDGYSKRIKVSEYKQMAGRAGRPGDERGEAIIIVGKRDRE. 189
27 -14.100d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  32..EPSAIQQRAIMPIQAQSGTGKTGTFSIAALQR--VKAPQALMLAPTRELALQIQKVVMA--IGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRRTDKIKMFILDEA-----DEMLSSGFKEQIYQPPTTQVVLLSATMPNDVLEVTTK........................................................................................................................................................ 202
28 -14.000d2oxca_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  23..RPSPVQLKAILIVQAKSGTGKTCVFSTIALDS--NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLIAVGSPGRIKQLIELDYNPGSIRLFILDEA-----DKLLEEGSFQEQINWASKQMLAVSATYPEFLANALTK........................................................................................................................................................ 195
29 -13.900d3dkpa1 c.37.1.0 (A:139-378) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  59...PVMLHGRELLAS-APTGSGKTLAFSIPILMQLKQPANRALIISPTRELASQIHRELIKISEGTAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPDLASVEWLVVDESDKLFEDGKTGLASIFLACTSHKVRRAMFSATFAYDVEQWCKL........................................................................................................................................................ 228
30 -13.800d2z0ma1 c.37.1.0 (A:1-192) automated matches {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  15  26...PLMLQGKNVV--RAKTGSGKTAAYAIPILELGM----KSLVVTPTRELTRQVASHIRDIGYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVDLSSFEIVIIDEA-----DLMFEMGFIDDIKISNRKITGLFSATIPEEIRKVVKD........................................................................................................................................................ 180
31 -13.600d4ct4b1 c.37.1.0 (B:95-301) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  35.....IALSGRDILARAKNGTGKSGAYLIPLLER--KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLVVIATPGRILDLIKKGVKVDHVQMIVLDEA-----DKLLSQDFVQIMED-KNRQILLYSATFPLSVQKFMNS........................................................................................................................................................ 196
32 -13.000d2pl3a1 c.37.1.0 (A:47-278) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  55...GLALQGKDVL--AAKTGSGKTLAFLVPVLEALYRLQ-GVLIISPTRELAYQTFEVLRK--IGGKDLKHEAERINNINILVCTPGRLLQHMDETVHATDLQMLVLDEA-----DRILDMGFADTMNA-KKRQTLLFSATQTKSVKDLA.......................................................................................................................................................... 218
33 -13.000d3bera_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  46...PLALQGRDII--LAETGSGKTGAFALPILNA--PQRLFALVLTPTRELAFQISEQFEA---GIDSMSQSLALAKKPHIIIATPGRLIDHLENTKNLRALKYLVMDEA-----DRILNMDFETEVDKPRDRKTFLFSATMTKKVQKLQRA........................................................................................................................................................ 208
34 -12.900d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  16  33...PGALRGESMV--QSQTGTGKTHAYLLPIMEK--RAEVQAVITAPTRELATQIYHETLKIT-GTDKQKALEKLNVQPHIVIGTPGRINDFIREQADVHTAHILVVDEA-----DLMLDMGFITDVDQPKDLQMLVFSATIPEKLKPFLKK........................................................................................................................................................ 198
35 -12.700d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  37........LGMDVLCQAKSGMGKTAVFVLATLQQ--TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIIVVGTPGRILALARNKSNLKHIKHFILDECD----KMLEQLDMRRDVQE-HEKQVMMFSATLSKEIRPVCRK........................................................................................................................................................ 197
36 -12.700d3mwja_ c.37.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  18  33...PLALEGKDLI--QARTGTGKTLAFALPIAERERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAV-EALLRGADAVVATPGRALDYLRQGVDLSRVEVAVLDEA-----DEMLSMGFEEEVEAPPSRQTLLFSATLPSWAKRLAER........................................................................................................................................................ 195
37 -12.200d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  12  10...................................................................................................................................................................NDESISTLSSILEKLGTGGIIYARTGEEAEEIYESLKNK----IGIVTATKKGDYEKFVEGEIDHLIGTGTLVRGLDLPIRFAVFVGC------------------PSFRVTIEDIDSLSPQ................... 117
38 -12.100d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  108.............LLQGDVGSGKTV-VAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTGATTPSEKEKIKSGLRNGQIDVVIGTHAL----IQEDVHFKNLGLVIIDEQHRFGVKQREAL-----MNKGKMVDTLVMSATP.................................................................................................................................................................. 241
39 -11.500d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  10  3............IIITGEPGVGKTTLVKKIVERLGKRAIGFWTVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVAT------------------------IPIRDVHPLVKEIRRLPGAVLIELTPENRLEDILSLLER....................................................................................................... 178
40 -11.500d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  2..........RHVFLTGPPGVGKTTKASEVLKSSGVPVDGFYTVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEE-----------------------IRNRKDVKVFNVTKENRNHLLPDIVT....................................................................................................... 182
41 -11.200d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  162........TRRISVISGGPGTGKTTKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA-------LRQLPLTDEQKKRIPEDASTLHRLLHAGNPLHLDVLVVDEASMIDLP--MMSRLIDALPDHARVIFL-LASVEAGAVLG............................................................................................................................................................ 310
42 -11.200d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  35....DTVLSGRDCLVVMPTGGGKSLQIPALLLN------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVTGCRTGQIRLLYIAPERLMNPVLLAVDEAHCISQPEYAALGQLRQRFPTLPFMALTATADD.................................................................................................................................................................. 186
43 -11.100d2gk6a1 c.37.1.19 (A:295-324,A:416-702) Upf1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  94AVKTVL--QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKFRSILIDESQATEPECMVPVVL-------GAKQLILV...................................................................................................................................................................... 276
44 -10.900d2i4ia3 c.37.1.0 (A:168-406) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  45....PIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGSLVLAPTRELAVQIYEEARK---GADIGQQIRDLERGCHLLVATPGRLVDMMERGKGLDFCKYLVLDEA-----DRMLDMGFEPQIRRKGVRHTMMFSATFPKEIQMLARD........................................................................................................................................................ 228
45 -10.900d3iuya1 c.37.1.0 (A:213-439) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  51...PIILQGIDLIVV-AQTGTGKTLSYLMPGFIHLDSQPIGMLVLTPTRELALHVEAECSK---GRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSNLRSITYLVIDEA-----DKMLDMEFEPQIRKRPDRQTVMTSATWPDTVRQLALS........................................................................................................................................................ 217
46 -10.400d5gvra_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  45...PTILSGRDMIGI-AFTGSGKTLVFTLPVIMFCLEQEKRLLIICPSRELARQTHGILEYYCRLLQEDSSPETIRHGVHMMVATPGRLMDLLQKKMSLDICRYLALDEA-----DRMIDMGFEGDIRTKGQRQTLLFSATMPKKIQNFAKS........................................................................................................................................................ 220
47 -10.000d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  2.....................................................................................................................................................PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEPEARIAIGHGQMRERELERVMHQRFNVLVCTTIIETGIDIP----------------TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 146
48 -9.740d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  20  25.........................................................................................................................................................................EDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKVTIATNMAGRG--------TDIKLGEGVKELGGLAVVGTERHESRRIDN-QLRGRSGR-QGDPGITQFYLSMEDE.. 149
49 -9.550d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  14  35.............CLADDMGLGKTLQTIAVFSAKKENELTPSLVICPLSVLKEELSKFAPHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDT--RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR---IALTGTP.................................................................................................................................................................. 162
50 -9.430d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  80.............LVCGDVGFGK-TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQFRDRFANWPVRIEMSRFRSAKEQTQILAEVAEGKI-KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD-----ILTLTATP.................................................................................................................................................................. 213
51 -9.300d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebrafish (Danio rerio) [TaxId: 7955]}  ali model 3D-neighbors follow..  14  70CVTGRRIENSYGCIMADEMGLGKTLQCITLIWTDCKPEIDKVIVVSPSSLVYNEVGKWLGGRVQPVAIDGGSKDEIDSKLILIISYETF-RLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRR---VLISGTP.................................................................................................................................................................. 230
52 -9.020d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}  ali model 3D-neighbors follow..  13  43............VLLEGPPHSGKT-------------------------ALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAM------KKIFDDAYKSQLSCVVVDDIRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNA--FSTTIHVPNIATGEQLLEALELLGNF-----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAS................................................................ 243
53 -9.020d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  10  36............LLLYGPNGTGKKTRCMALLESYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA---QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER---IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPII............................................................................ 252
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.