current user: public

If you have questions about the server, please let us know.

Query: d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}, from SCOP207

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQEIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYHLast
1 -47.200[C] COG1017 Hemoglobin-like flavoprotein  ali follow..  13  2..LDAQTIATVKATIPLLVEPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREAL----FNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGTHLLATLDEMFN--PGQEVLDAWGKAYGVLANVFIHR.. 134
2 -22.800[C] KOG3378 Globins and related hemoproteins  ali follow..  11  257DRITERQKHIFTETFPVIFKERNGLVLFAKYFSEFPHYKNIWPQFRTLQDSASNELANHCSVYMSGLKV........................................................................ 330
3 -11.200[R] COG2346 Truncated hemoglobins  ali follow..  18.TMSSETVTLYEAIGGDATVRALTRRFYELM-DTLPEAARCRAIHPADLSGSEAKFYDYLTGYLGGPPVYVEKHGH-----PMLRRRHFVAPIGPAERDEWLLCFRRAMDET---IENAKLREIIWAPVERLAFHMQNQ.. 146
4 -6.950[L] COG0692 Uracil DNA glycosylase  ali follow..  10  2............KNWTDVIGTEKAQPYFQHTLQIYPPQEDVFNAFKYTAFEDVKVVPNQAHGLAFSVKPEVAIPPSLLNIYKELTQDISGFQMPSVKWAEQGVLLLNTVLTVERGMAHSHANLGWERFTDKVIAVLNEH.. 152
5 -6.580[L] KOG2994 Uracil DNA glycosylase  ali follow..  13  100.CYVPLSELLVEESWLKALPGEFHKPYAKSL-LIYPPQHLIFNALNTTPFDRVKTVPGQAMGLSFSVPEGEKLPSSLLNIFKELHKRHGNL----QKWAVQGVLLLNAVLTVRSKQPNSHAKKGWEQFTDAVIQSISQQ.. 263
6 -6.170[S] KOG4654 Uncharacterized conserved protein  ali follow..  10  14.RPKEKVVYIYELLCRGEDPSSESPEFWNEFFLLQPNFEALENEIGKLNNEQLQLVKPNLNTLFQRCIEMLDTLHTLCSLFYGIFKKSLNEIFGHEKMDEWLKLLMQYCNRILLGDVPENARFMCLKLLQVLVTGTDN... 167
7 -5.790[O] COG0576 Molecular chaperone GrpE (heat shock protein)  ali follow..  13  67.........................................FENVKKRHIADRDASQKYRSQSL--AQDLLPALDSFEKALATTSDQEEVKQIL-KGMEMVYNQILVAFEKEVGEQFDPNFHQAVMQD-NEITAELQKGY. 175
8 -5.290[DO] KOG1155 Anaphase-promoting complex (APC), Cdc23 subunit  ali follow..  10  400VDINPTDYRALGQAYEMMGMPFYALHYFRKSIFFLPNDSRLWIAMAKCYQTEQ---LYMLEEAIKCYKRAVNCTDTEGIALNQLAKLHQKLGRNEEAAYYFEKDLERMDAEG---LEGPNMFEAL................ 521
9 -5.290[S] KOG2149 Uncharacterized conserved protein  ali follow..  12  61...TSKKGLTLLELKNRTGHPNAKVR-IKDLLKHHPAKYATTHKLRELITDDDKLVRDDFYTLLTGIFLACKEDINKGLMVSSLAMTKSSIEVRLMAFKFFRLVL---------EFYSPTFSLYAEKILENYKDVIHNN.. 203
10 -5.260[O] KOG3003 Molecular chaperone of the GrpE family  ali follow..  11  83.........................................SENMRNRLNKQISDAKIFGIQSF--CKDLLEVADTLGHATQAVPKDKLSGNADLKNLTMTRASLLQVFKRHINQKFDPNQHEALFQK-NTVVEVTKLGY. 196

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.