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current user: public |
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Query: d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Thermoplasma acidophilum [TaxId: 2303]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . | |||||||
# | Score | Template | Links and tools | %id | First | SPVVEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLSSILFMHALISNKRLNIPEKIW | Last |
1 | -70.600 | [S] COG2096 Uncharacterized conserved protein | ali follow.. | 40 | 33 | DLRVEAYGTVDETNSAIGIARLHTSGETLDAMLFRIQNDLFDLGADLATPDNGEPIVESQVMRLENEIDELNAALEPLTSFVLPGGSAAAANLHMARTVCRRAERLMVELSVTEIVSPAALKYANRLSDFLFVAARFTNEA-GRADILW | 190 |
2 | -35.500 | [E] COG4812 Ethanolamine utilization cobalamin adenosyltransferase | ali follow.. | 14 | 107 | DPRLGFRAVLDSTIALAVWLQIELA-EPWQPWLADIRSRLGNIMRADALGEGCQAIVGLSDEDLHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVFITRSLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQI | 259 |
3 | -6.800 | [K] KOG4552 Vitamin-D-receptor interacting protein complex component | ali follow.. | 17 | 6 | STKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKM-EEQAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQ-----ANKRPVSEELIKYAHRISSANAVSA.............. | 139 |
4 | -6.480 | [O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis | ali follow.. | 10 | 77 | ..KVAFFGRTSSINAMLWDKVLPSGIGHITNCFLSVEKTVNQLAHALHMDKDLKAGCLVRVFWPKAKCALLRDDLVLVDS---PGTDVTTELDSWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNPNIFILNNRWDASASEPEYM. | 249 |
5 | -6.370 | [R] COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase | ali follow.. | 18 | 11 | .............................................................NVLEAAQERIMWTLETLPRVCVSGGKDSGLMLHLTATLARKMNKKIHVLFIDWEAQSCTITYIESLREYY.................. | 83 |
6 | -5.840 | [S] COG2237 Predicted membrane protein | ali follow.. | 8 | 63 | .....IVGREANVRAAVALGIADPEDSDTNTIFGGIRDELLEKGAEIVSFAGDKNVGVISDQKIAEQLELYLQMNEVKRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSENLESTYYILKHVFSD.................... | 190 |
7 | -5.560 | [R] KOG4678 FOG: Calponin homology domain | ali follow.. | 13 | 304 | ......HSTAEELQATL-------------QELSDQQQMVQELTAENEKLVDEKTILETSFHQHRERAEQLSQENEKLMNLLQERVKNEEPTTQEGKII--ELEQKCTGILEQGRFEEKLLNIQQQLTCSLRKVEEENQGALEMIKRL. | 431 |
8 | -5.330 | [S] COG4472 Uncharacterized protein conserved in bacteria | ali follow.. | 20 | 1 | .........MGFTEETVRFKLDDSNKKEISETLTDVYASLNDKG----------------------------NPINQIVGYVLSGDPAYVPRYNNARNQIRKYERDEI-------VEELVRYYLKG....................... | 83 |
9 | -5.010 | [T] KOG4244 Failed axon connections (fax) protein/glutathione S-transferase-like protein | ali follow.. | 7 | 200 | .................................SALLRRITGSDIGFHSREDIINIGSEDLKAISKYLGN--------KHYFHPTKVDACIFSHLCQIYYAPYTSEHRDLIDGE---KNLAEYVERIKNRFY................. | 291 |
10 | -5.010 | [K] KOG3404 G10 protein/predicted nuclear transcription regulator | ali follow.. | 9 | 1 | ..............................................MPKVKRSRKAPQDGWELIEPTLDQLDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAYSRELLDICEGLADKNLL................ | 89 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |