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Query: d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}, from SCOP207

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLGILNKMFDPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQXSMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNLast
1 -76.800[U] COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase)  ali follow..  60  1MLGFAKKLFGSNERKVKTLATRVAKINAYEAEYAALSDEALKGKTAEFKARLEKGETLDDILNEAFAVVREASKRVLGMRHFDVQMVGGMVLHFSGISEMRTGEGKTLVATLPTYLNALEGKGVHVITVNDYLARRDADWMGQVYNFLGLSYGVIVNGLSQGERQRAYRSDITYGTNNEFGFDYLRDNLVYSVDEMVQRGHNFAIVDEVDSILIDEARTPLIISGPTEDRSASVTIQNYFRLYKKLSGMTGTASTEAQEFDDIYKMSVSEIPTN 405
2 -11.000[L] COG1111 ERCC4-like helicases  ali follow..  16  15............................................................................IEARTYQQLLAADVIRKGNSMIVAPTALGKTVVAVLVARLRKYRGSKVLILSPSKPLAI---QHEESFREFMLATCTSLTGSIKPEERKERWIKSQIISATPQTVESDILAGRYD------LRDVSLIVFDELASNYIQNARHPLILGLTASPGADEDKIKTVCELFMNEVVVKTEGDPDVRPYLKPIKIEWVKVRMT 218
3 -9.770[L] KOG1564 DNA repair protein RHP57  ali follow..  14  14................EKIASAFELGEVSTVDLLTLDITELERRTHCSQSELLQ-EQISLLLQPVRCSASKVTSKYLGDVKLDETLHGGIPV--GQLTEIESGSGKSLMVQLPLSLGGMNKAAVFISTESGLETKR-------LFELARYLPERYPKADKKDIIIKNPGDRVYTILCPDL--ESQEHIIQYQLPILFNRKIGLVILDSVASNYRAELRYNRSKSHFRDLDNIAKRGNQLGKLAMTLRTLAH-------------QHEAAVVIAN 260
4 -8.880[DL] KOG1434 Meiotic recombination protein Dmc1  ali follow..  15  36...........KSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKIIQVGFIPAT---VQLDIRQRVYSLSTGSKQLDSILGGG--IMTMSITEVEFRCGKTVTTQLPREMGGGEGKVAYIDTEGTFRPER----IKQIAEGYELDPESCLANVS---------------YARALNSEHQMELVEQLGEELSSGDYRLIVVDSIMANFRVD------YCGRGELSERQQKLNQHLFKLNRLA----------------EEFNVAVFLTN 261
5 -8.850[L] KOG1433 DNA repair protein RAD51/RHP55  ali follow..  16  39...........QQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSAR---TFYQMRADVVQLSTGSKELDKLLGGG--IETGSITEIEFRCGKTVTCQLPISQKGGEGKCMYIDTENTFRPER-------------------LAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKLIQMAAGMLFESRYALLIVDSAMALYRSD------YIGRGELAARQNHLGLFLRMLQRLA----------------DEFGVAVVITN 264
6 -8.780[NU] COG2874 Predicted ATPases involved in biogenesis of archaeal flagella  ali follow..  14  13......................................................................KKNILSSGNGEIDKRLGGGIPLGSLTLIEGENDTGKSVLCQQFVYGGLMSGHNIAYYTTEN-----TIKSFLRQMESLSLDV----SDFYAWGYLRVFPVHLEGIDWSTEQMRSILNLVANHIKTI---RENIAIIDSLTMFTT............................................................ 144
7 -8.390[R] KOG0354 DEAD-box like helicase  ali follow..  12  18.......................QVVDKIENEYHNNTIGLNGYSVDEYFDANDSNRYRLQHELDESAAQQWVYPINVSFRDYQFNIV---ALFENVLVALPTGLGKTFIAAVVMYLRWFPKSYIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICD------RTRISCLVIDEAHRSTGNYAYVEVV------------HLLSLSNKNFRILALSATPGNKLEAIQNVDSLHISRIEI. 251
8 -8.370[L] COG1110 Reverse gyrase  ali follow..  14  33.................................EPIKAEDYEKLVFAVRNALKLRGTLKDWLNKEVSEVEDLFKRATGFRFWSAQRTWVKRILRGKSFSIPTGMGKSTFGAFISIYFAIKGKRSYIVVPTTPLVVQTVKKIQDMMERAGVNVRLVYYHGNLKKKEKEEALKRI--KDGDFDILVTSSQFLATRFDELLRDFDLIFVDDVDAFLKASKNIDRSLLLLGFTQEVINRAWEVIKLKKQLAKLLQAQGKEKEVEELNKEIEKIE.... 276
9 -8.230[S] COG3421 Uncharacterized protein conserved in bacteria  ali follow..  12  2......................................NSINQQKIKRRKKMANNKTLFDWVEDRKSTLEEIEQTKYPFFEWQKSALENFVIFDRALFNMATGAGKTMMAALILYYFEKGYRHFLFFVNQNNIVDKTENNFIDPAHAKFLFTEKILQGDTVIPIRKV-GIEIKFTSIQKLYNDIHTERENQTTLADLHKLNLVMLGDEA................................................................. 209
10 -8.070[R] COG1202 Superfamily II helicase, archaea-specific  ali follow..  19  182......................................DELKAKHVRVERMKVDEVDIPESFKNVLKLEGITELLPVQVLAIKNGLLKG----ENLLVVSATASGKTLIGELAGIPKALEGKKMLFLVPLVALANQKYEDFKRRYSKLGLKVAIRVGMSRIKTREEPVDADIIVGTYEGV------DYLLRSGKK--IGNVGTVVIDEIH-MIDDEERGPRL--------DGLIARLRKLYPKAQFIGLSATNPQELARSLGMKLVLYDERPV. 403

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.