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current user: public |
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Query: d3ci3a1 a.25.2.0 (A:2-188) automated matches {Lactobacillus reuteri [TaxId: 1598]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | KIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKDVFR | Last |
1 | -88.400 | [S] COG2096 Uncharacterized conserved protein | ali follow.. | 40 | 10 | KIYTRTGDKGTTALVSGPRRLKHDLRVEAYGTVDETNSAIGIARLHTSG-LETLDAMLFRIQNDLFDLGADLATPDNGEPLSPLRIVESQVMRLENEIDELNAALEPLTSFVLPGGSAAAANLHMARTVCRRAERLMVELSVTEIVSPAALKYANRLSDFLFVAARFTNE-AGRADILWVPGKN... | 195 |
2 | -44.300 | [E] COG4812 Ethanolamine utilization cobalamin adenosyltransferase | ali follow.. | 13 | 84 | RQPVAKKPDTLTHLSAEKMVAKSDPRLGFRAVLDSTIALAVWLQIELA---EPWQPWLADIRSRLGNI---MRADALGEPLGCQAIVGLSDEDLHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVFITRSLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGETQ | 267 |
3 | -7.260 | [O] KOG0448 Mitofusin 1 GTPase, involved in mitochondrila biogenesis | ali follow.. | 10 | 69 | .................EVLSRRHMKVAFFGRTSSINAMLW--DKVLPSGIGHITNCFLSVEGYLMTEGSDEKKSVKTVNQLAHALHMDKDLKAGCLVRVFWPKAK-LRDDLVPGTDVTTELDSWIDKFCLDADVFVLVANSESTLMNTEKHFFHKVNPNIFILNNRWDASASEPEYMEDVRRQHME | 258 |
4 | -5.900 | [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold | ali follow.. | 11 | 46 | RVTTLDRTNPNA-----TAIAIKDGLFLEVGSDSEVMALAGSGTKIVDLKGKGVLPGLIDNHTHVVRGGLNYNM----------ELRWDGVRSLADAMDMLKRQVAPAPQWVRVVGGFTEHQF---------AEKRLPTIEEINAVAPDTPVFLLHLYDRALLNGAALRAVGYTRDTPNPPGGEITR | 210 |
5 | -5.870 | [S] COG2237 Predicted membrane protein | ali follow.. | 13 | 17 | KIYKRTGSPGEKYLHKNDRGDKAKMETPIVGREANVRAAVALGIADPEDSDTNTIFGGIRILDELLEKGVDAEIVSFAGDKNVGVISDQ---KIAEQLELYLQMNEVKRAVFVSDGAEDETLVPIVQSRMKIDSVKRIVVMQSENLESTYYILKHVFSD............................ | 190 |
6 | -5.820 | [R] COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase | ali follow.. | 18 | 11 | ...........................................................................................NVLEAAQERIMWTLETLPRVCVSGGKDSGLMLHLTATLARKMNKKIHVLFIDWEAQSCTITYIESLREYY.......................... | 83 |
7 | -5.580 | [K] KOG4552 Vitamin-D-receptor interacting protein complex component | ali follow.. | 12 | 3 | ....................FHLSTKERLLLLIDDIEMIAKELIEQAHQKISS--TELVDLLDLLVAKDEEFRKMLELAEEQAKV--EEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQ-----ANKRPVSEELIKYAHRISSA........................... | 134 |
8 | -5.490 | [H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase | ali follow.. | 14 | 59 | ..............................GILSEAMAQRGASVTGIDMGEAPLAVARLHQLESGVAVDYRQITAEQMAEEMPGQFDVVTCLEMLEHVPDPASVIRACHRLVKPGGQV------FLSTINRNPKAYLFAVIGAEYILQLLPRGTHDFRKFI.......................... | 183 |
9 | -5.340 | [J] COG2813 16S RNA G1207 methylase RsmC | ali follow.. | 12 | 210 | TIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN---------NALSGVEPFRFNAVLPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF.......................... | 364 |
10 | -5.340 | [S] KOG4559 Uncharacterized conserved protein | ali follow.. | 10 | 69 | ...........................EDYKLLEEMNKATIAKYKDMRQIAENLNTSTSELSLKFQQLAPMM----------------QQIDEISDTVDKLEAAAYKLDAYSI.......................................................................... | 138 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |