FFAS03 results for d3ldaa1

Query: d3ldaa1 a.60.4.1 (A:78-144) DNA repair protein Rad51, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}, from SCOP207

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						`. 10 . 20 . 30 . 40 . 50 . 60 .`
#	Score	Template	Links and tools	%id	First	`GSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGF`	Last
1	-15.600	`[L] KOG1433 DNA repair protein RAD51/RHP55`	`ali follow..`	38	17	`EGPLSVTKLIGGSITAKDIKLLQQASLHTVESVANATKKQLMAIPGLGGGKVEQIITEANKLVPLGF`	83
2	-15.000	`[DL] KOG1434 Meiotic recombination protein Dmc1`	`ali follow..`	31	14	`KNILSVDELQNYGINASDLQKLKSGGIYTVNTVLSTTRRHLCKIKGLSEVKVEKIKEAAGKII....`	76
3	-13.600	`[L] KOG2841 Structure-specific endonuclease ERCC1-XPF, ERCC1 component`	`ali follow..`	20	181	`.......LTSIRGINKSDSLSLLSK-FGSLERALVASRDELEQLEGWGPTKVNRFLEAVQQ......`	233
4	-13.600	`[L] COG5241 Nucleotide excision repair endonuclease NEF1, RAD10 subunit`	`ali follow..`	20	181	`.......LTSIRGINKSDSLSLLSK-FGSLERALVASRDELEQLEGWGPTKVNRFLEAVQQ......`	233
5	-11.900	`[L] COG3359 Predicted exonuclease`	`ali follow..`	12	5	`......TYIHIPGVGKALEQKIWASGINSWDEFLEMEDRI--SIPPSRKTRICEEIKTSCRHLAEK.`	62
6	-11.800	`[S] COG3743 Uncharacterized conserved protein`	`ali follow..`	18	141	`......DLKAISGIGPKLEKVLNGLGIWTYAQIAAWSPQEIAWVDD-GRIGRDDWTAQAAVLAA...`	202
7	-10.900	`[R] COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains`	`ali follow..`	22	461	`.....IDAASIPGVGPARKAALRSFGIETAADV---TRRGVKQVKGFGDHLTQAVID--KASCERRF`	518
8	-10.800	`[R] COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain)`	`ali follow..`	18	312	`.......LNRIPRVQKFLMDKLIVE-FGNLDALLNASVEDLSAVDGVGSLWARHITDGLGRL.....`	365
9	-10.800	`[L] COG0322 Nuclease subunit of the excinuclease complex`	`ali follow..`	25	566	`.......LSDIPGVGSKRRQALLTR-FGGLRGVIAASREDLEKVEGISKALAETIYNHLH.......`	617
10	-9.970	`[L] COG0632 Holliday junction resolvasome, DNA-binding subunit`	`ali follow..`	17	75	`.......LIKVNGVGPKLALAILSG--QFVGAVEREDITTLVKLPGVGKKTAERLVVEMKDRFK...`	133
11	-9.620	`[K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit`	`ali follow..`	5	256	`........VDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLASM.....`	309
12	-9.590	`[L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair`	`ali follow..`	21	171	`AFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFG.....................`	216
13	-9.420	`[L] KOG2093 Translesion DNA polymerase - REV1 deoxycytidyl transferase`	`ali follow..`	13	491	`AYMAPMSLDLLPGVGSSISHKLKQAGLNNCGDVQNTTLEKMEKV--LGKKLGQNLFQNCRGI.....`	550

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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