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Query: TM0002 TM0002 281883 Purified-2001-08-29, from T.maritima

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
1 -4.680[J] COG0256 Ribosomal protein L18  ali follow..  28  27.......RLAVYRSEKNIYAQVIDDVNGTTLVSAS...... 54
2 -3.990[E] COG0137 Argininosuccinate synthase  ali follow..  20  319...........YSPLKEALDAFIVKTQERVTGMVRVKFFK. 347
3 -3.760[E] COG0831 Urea amidohydrolase (urease) gamma subunit  ali follow..  13  3LTPQEKDKLLIFTAALVAERRKNRGLKLNYPEAVAY..... 38
4 -3.710[E] KOG2551 Phospholipase/carboxyhydrolase  ali follow..  24  13.......RILCLHTSGRILQAGIGKWPDTILRDLDL..... 44
5 -3.540[J] KOG0900 40S ribosomal protein S20  ali follow..  30  66......QRLIDLHSPSEIVKQIT---SISIEPGVEVEVT.. 95
6 -3.360[T] KOG2437 Muskelin  ali follow..  16  706......QRTQLFDTLVNFFPDSMTPPKGNLVDLITL..... 735
7 -3.180[R] COG3772 Phage-related lysozyme (muraminidase)  ali follow..  19  74..............CDRVNAIERDKALAWVEKNIRVPLTE. 99
8 -3.040[E] KOG1706 Argininosuccinate synthase  ali follow..  13  327...........HSPECEFVRHCIAKSQERVEGKVQVSVLK. 355
9 -2.790[J] KOG3502 40S ribosomal protein S28  ali follow..  29  29................QVRVEFMDDTSRSIIRNVKGPVRE. 52
10 -2.690[H] COG1270 Cobalamin biosynthesis protein CobD/CbiB  ali follow..  20  141.............DEGGVSRAAIESLAENASDGIVAPA... 165

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.