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Query: TM0001 TM0001 281882 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
# Score Template Links and tools%idFirst MVYGKEGYGRSKNILLSECVCGIISLELNGFQYFLRGMETLLast
1 -4.700IDP06222 hypothetical protein HP1093 [Helicobacter pylori 26695] NP_207884 [Helicobacter pylori 26695]  ali follow..  28  4............SLIITETASTIASQTLMGISYHKRA.... 28
2 -3.830IDP91322 hypothetical protein VV2_0302 [Vibrio vulnificus CMCP6] VV2_0302 [Vibrio vulnificus CMCP6]  ali follow..  21  21....IQGQGKRARFLRARCKCGPDCRTGEDIQAYFA..... 52
3 -3.550IDP95343 hypothetical protein VCA0124 [Vibrio cholerae O1 biovar El Tor str. N16961] NP_232525 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  90........GQRGELLMNQCELSMLQGLDIYIQQYIEDVDN. 121
4 -3.550IDP95387 set238a-024 [Vibrio cholerae]  ali follow..  12  90........GQRGELLMNQCELSMLQGLDIYIQQYIEDVDN. 121
5 -3.280IDP01509 oxaloacetate decarboxylase subunit gamma VC0549 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  20  11.ALSAKNVHKPKNVRMTR-MTHIGSLLLDAATLMVTGMAVV 53
6 -3.210IDP91606 hypothetical protein CBU_1532 [Coxiella burnetii RSA 493]  ali follow..  30  59....KDDRQDPKNYLIWQHFCRNLSPKSSNYQEFRRGLST. 97
7 -2.840IDP90535 rRNA methylase [Vibrio cholerae O1 biovar eltor str. N16961] VC2695 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  101LLFGPETRGLPAELIASLPAEQRIRIPMMP........... 130
8 -2.830IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]  ali follow..  22  69LVVTTGGTGPALRDITPEATKKVCQKMLPGFGELMR..... 104
9 -2.680IDP90417 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_504 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  25  12VITSREGY-NSKHLSQDPFVVEAIEVVRLGETSFFRNCD.. 54
10 -2.610IDP90423 gene: omcA; 9kDa-Cysteine-Rich Lipoprotein [Chlamydia trachomatis D/UW-3/CX] CT_444 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  29  2...........KKTALLAALCSVVSLSS............. 18
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;