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Query: TM0005 TM0005 281886 Purified-2001-01-30, from T.maritima

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEILSGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIFLast
1 -31.200IDP05118 putative helicase [Escherichia coli O157:H7 EDL933] Z5902 [Escherichia coli O157:H7 str. EDL933]  ali follow..  16  240..........................................................................................................................................................................LHPSQRKLVESPANGP--VRVLGGAGTGKTVVAMHRARWLSQRGKKVLFTTFTRNLAADIRANLQEEMARIDVVNIDAWMSDLKRHGYDFRVVYDSDEGRRKCWNYALQQAPAELGLPDNFYAEEWQRVVQPNAVYTREEYLKVSRVGRGTALSRIQRAKIWPVFEEFRAQMARAKLREMGDAMHEAIVLFKE---------VQLPYSSIVVDEA-QDIGAPAFTLIRSPXDLFIVGDGHQ--------RIYRNKVVLGQCGINVRGRRSKKLKINYRTTEETRQFAVGLLTGVKVDNXDGEADTS------------NDYLSLLHGEKPMIT-----------------HAADFKEEAATXVKQIQALLANQVRSQDICITARTKHXCDRYASALNDGVRVATMHRIKGLEFQYVFLALASDDPVEQRDALFNERAL-VAATRAVKGLFVSSSSPLLVAD................... 704
2 -26.900IDP05304 gene: helD; DNA helicase IV [Escherichia coli O157:H7 EDL933] Z1313 [Escherichia coli O157:H7 str. EDL933]  ali follow..  14  225.......................................................................................................................................................................SSPLNPAQARAV---VNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEQILLLAFGRKAAEEMDERIRERLHTEDI-DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEPQRAALLAALRKQNSQTTLFAVGDDWQ---AIYR---SGAQMSLTTAFHENFGEERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPL-----------------------------------------NSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATQIDFMTIHASKGQQADYVLIVGLQEAAARESIMEAEERRL-VALTRARHRVWALFNKE--NPSPFVEIL............. 704
3 -18.400IDP90600 gene: uvrD; DNA-dependent helicase II [Vibrio cholerae O1 biovar eltor str. N16961] VC0190 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  7......................................................................................................................................................................LLDGLNDKQREAVAAP--LENLLILAG-AGSGKTRVLVHRIAWLMSVEESVMAVTFTNKAAAEMRGRIEETASGMWCGTFHGICHRILRAHYLDAKLLED----------DSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREHY--QARFKHILVDEFQDTNAIQAWLRMMAGSNVMIVGDDDQ---SIYGWRGARVENIEFTR--EFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQL------------------------------------TDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALQASLAYRIYGGFERQEKDALSYLRLINNRNDDTAF---ERVINTP-PRG------LGDKTL-------ETIRFAARDRGCTL.. 437
4 -18.200IDP90755 gene: uvrD; DNA-dependent helicase II [Yersinia pestis CO92] YPO3841 [Yersinia pestis CO92]  ali follow..  14  2..................................................................................................................................................................DVSDLLDSLNEKQRDAVAAP--RGNLLVLAG-AGSGKTRVLVHRIAWLLSVENSIISVTFTNKAAAEMRHRIEH------IGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAMWYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILNRERFTNILVDEFQDTNNIQAWIRLLAGSNVMIVGDDDQ---SIYGWRGAQVENIQFLK--DFPGAETIRLEQNYRSTSIILAAANALIANNDGRMGKNL------------------------------------TDGAEGEPISLYCAFNELDEARFVVNRIKAWQDNGGALNDCAILYRSNAQSRVLEEALQTATPYRIYGGFDRQEKDSLAYLRLISNRNDDAAF---ERVVNTP-TRG------IGDRTL-------DVVRQTARDRQLTL.. 437
5 -18.000IDP05220 putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1101 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  1...........................................................................................................................................................................................MLILAG-AGSGKTKTITTRLAYLIGEVGNTLTLTFTNKAASVMRHRALNGNHNPLLCTFHKFGLLFLKLHFERLRKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQ--SLLYNYITVDEYQDTNTLQKILKNLCCENITVVGDDDQ---SIYSWRGAKIENILFQN--DFKNVKLVKLEQNYRSVGTILQAANNLISHNEQRLGKTL------------------------------------CTKDTGENIKILKNENEKDEGLYIAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFKKQISYKLLSGYERLEKDLISYLRLILNPSDDLSFK---RIINRP-KRS------IGEKAL-------KNLEEYAKKRQISL.. 418
6 -17.300IDP06145 gene: rep; ATP-dependent DNA helicase [Helicobacter pylori J99] NP_224089 [Helicobacter pylori J99]  ali follow..  15  7......................................................................................................................................................................ILDNLNGAQKIAACHI--QGPLLILAG-AGSGKTKTLTSRLAYLIGACENTLTLTFTNKASKEMQERLRQHMNLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSVQDSECYKAYELYQNALKKDNLVDFDDLLCLSLKILQDNEKLAKETSE---------------------------------------------RYHYIMVDEYQDTNALQEFLKQLSFHNLCVVGDDDQ---SIYGFRGADISNILFSK--HFKGAKIVKLETNYRSSAEILACANSLISHNQHRHIKTL------------------------------------SFKGSHKSVICKEYPTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLALNIPYRLIGAYERAEKDALALMHVVAKKDDRFFIK---RVLNKP-PRG------LGKITQ-------EWIFSLLDEEGLNL.. 421
7 -17.100IDP05759 gene: pcrA; ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] lmo1759 [Listeria monocytogenes EGD-e]  ali follow..  16  8......................................................................................................................................................................LVDGLNPEQRRAVEST--EGPLLIMAG-AGSGKTRVLTHRIAYLVRERGNILAITFTNKAAREMKSRIGNEAESIWISTFHSMCVRILRRDIDRILDGSDQLSVIKGILKEKN-----VDPKKFEPRGILASISNAKNELITASEYIKEASGFYDKMVGEVYEKYEKKLKK-------------NQALDFDDLIMVTLFERVPDVLEQRKFQYIHVDEYQDTNHAQLLVKQLASKNLCVVGDSDQ---SIYGWRGADISNIMFEK--DYPNAKTILLEENYRSTKRILEAANRVIENNGNRKPKNL------------------------------------TSNAEGKKIFYHKALTEKEEAAYVVMKIQEEVNSNRPLSDFAILYRTNAQSRVMEEYFKSNMAYTMVGGYDRKEKDILAYLRLISNNEDDISL---TRIVNVP-KRG------VGPGTL-------DKLNNVATTYDLSL.. 441
8 -16.300IDP91395 ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6] VV1_1082 [Vibrio vulnificus CMCP6]  ali follow..  14  2.........................................................................................................................................................................KLNPRQDEAVKYV--SGPCLVLAG-AGSGKTRVITNKIAYLVQQCGNIAAVTFTNKAAREMKERVGQ------LGKGESKGLMVSTFTLGLNIIKREYRHLGLKSGFSLFDDQDQLALLKELTEKQLDGDKDLLRQLMSTISNWKNDMLSPEQAVARAQGEQQQLFAFCFEMYQKQMKAYNALDFDDLILLPVLLLRGHDEVRQQNRIRYLLVDEYQDTNTSQELVRLLVGGRLTVVGDDDQ---SIYSWRGAKPQNLVLGQ--DYPNLRLIKLEQNYRSTSRILRAANILIANNPHVYEKSL------------------------------------SEIPDGEKLKVLLANNDEHEAERVTGEIIAHKLNRTDYRDYAILYRGNHQSRLIEKSLQNRVPYRLSGGFARAEKDIMAYLRVLVNPDDDNAFL---RIVNTP-KRE------IGPVTL-------EKLGSYANMRGKSL.. 432
9 -12.700IDP95469 nonstructural polyprotein [Chikungunya virus] ABD95937 [Chikungunya virus]  ali follow..  19  702.............................................................................................................................................................................EGLKIRPACPYKIAVIGVFGVPGSGKSAIIKN------LVTRQDLVTSGKKENCQEITTDVMR------------------------------------------------------------------------------------------------------QRGLEISARTVDSLLLNGCNR----------------PVDVLYVDEACHSGTLLALIALVRPRKVVLCGDPKQCG-----------MMQMKVNYNHNICTQVYHKSISRRCTLPVTAIVSSLHYEGKMRT-------------------------------------------------------TNEYNKPIVVDTTGST----KPDPGDLVLTCFRGWVKQLQIDY-RGYEVMTAAASQGLTRKGVYA--VRQKVNENPLYASTSEHVNVLLTRTEGKLVWK----TLSGDPWIKTLQN........... 972
10 -10.800IDP92801 gene: cas3; Cas3 [Vibrio phage ICP1_2011_A] AGG09390 [Vibrio phage ICP1_2011_A]  ali follow..  348...........................................................................................................................................................................KFAWQNGVNMVDSSIDFCINMASTGKGKTLANLKLLQHFGNVRCSLGMVSLTKQTAKQFLDMGVDYNSAAMVTGFSKSRFNLGSESLDQDEVSVEYWGQTSSLSKVFPN----------------------------------------------------------NNAGFKNKKLLSAPILVTTHLVKASGVKKGNKQMLPY--SDLVLDEI-DDYGIEDMVVLARGNKVIISS--ATITPAISN--------IFYEAYSSGYKVFCANKQTTYKG---------NVVWWDEFGIKVEKVTDQFSNLNTRFVNKRITNLLESTPKHKALVVDQDDNMEAVKQSITTLHNAHNSGGVSFGLIRTTTILQNWETDLSIKILCYHSRFVGDTKAQMEEYLS-YKKFVDTTTPTAYIVVATPVVEVGRDFDFIIEPSSERSIVQCAGRNIHILK........................... 771
11 -10.600IDP95070 gene: A19R; A19R [Monkeypox virus Zaire-96-I-16] AAL40587 [Monkeypox virus Zaire-96-I-16]  ali follow..  81.........................................................................................................................................................................KLYPLQRKVVSEVVSNMR-ITLHLACGFGKTITTCYLMTTH---GRKTIICVPNKMLIHQWKTQVEAVGLEHKIS---------------------------------------------------------------------------------------IDGVSSLLKELKT----------QSPDVLIVVSRHLTNDAFCKYHYDLFILDESHTYNLMN----LAYYPPMMCYF----LTATPRPANRIYCNSVINIAKLSDLKKTIYTVDSFFEPYSTDNIRNMVKRLDGPSNKYHIYTEKLLSV---------------------------------------------DEPRNQLILDTLVEEFKSGTINRIL-VITKLREHMVFFYKRLLDPGPEVVFIGDAQNRRTPDMVKSIKELNRFIFGL--DIPSLDSLFVINNMQIELLGRVCRETELL--RTVYVFPNTSIKEIK. 437
12 -10.200IDP92567 polyprotein, partial [Dengue virus 3] AEF33500 [Dengue virus 3]  ali follow..  13  303...........................................................................................................................................................................DGPTPELEEEMFKKRNLTIMDLHPGSGKTRKYLAIVREAIKRRLRTLILAPTRVVAAEMEEALKGLPIRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGYISTRVGMGEAAAIFMTATPPGTAEAFPQSNAPIQDEERDIPERSWNSGNEWTTDFVGKTVWFVPSIKAGNDNCLRKNGKKVIQLSRKTFDTEYQKT---LNDWDFVVTTDISEMGANFKADRVIDPRRCLKPVILTDGPERVILAGPMPVTAASAAQRRGRV---GRNPQKENDQYIFTGQPLNNDEDHAHWTEAKM-----LDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTFVEL-MRRGDLPVWLAHKVASEGIKYTDRKWC-------FDGERNNQIL----EENMDVEIWTKEGERKK----LRPRWL-----DARTYSDPLALKEFKDFAAGR...... 748
13 -10.100IDP92010 TFIIH basal transcription factor complex helicase XPB subunit, putative [Toxoplasma gondii ME49] TGME49_069660 [Toxoplasma gondii ME49]  ali follow..  15  471.........................................................................................................................................................................KIRYYQERALRKMFSNGR-GIIVLPCGAGKTLTGITAACTL---RKSVMILTTSAVAVDQWRKQFEEYTTI----------------------------------SSRLLTLTAETKQTLWP--------------------------------------------------------------VDEAGVLVSTYTMLAFQQIREREWGLLIFDEVQFAPAPAFRRINDLVKSHCRLG----LTATL--VREDDLIKDLQWLI-----------PKLFEANWI------------ELQDQGFLARVSCQEVWCPMTA------------------DFYREYLRCSHAKQRKLWVCNPTKLMTCEWLLRYHEARG---DKILVFSDNVFALLHTAKALNRPF----IYGQVSAVERVAILNKFKHESTFNSAI--DIPCANVVIFASRRQEA-LGRILRAKPQA.................. 809
14 -9.740IDP00278 gene: N/A; NS3 RNA Helicase AAA99437_1474-2092 [Dengue virus 3]  ali follow..  13  173...........................................................................................................................................................................DGPTPELEEEMFKKRNLTIMDLHPGSGKTRKYLAIVREAIKRRLRTLILAPTRVVAAEMEEAMKGLPIRYQTTATKSEHTGREIVDLMCHATFTMRLLSPVRVPNYNLIIMDEAHFTDPASIAARGYISTRVGMGEAAAIFMTATPPGTADAFPQSNAPIQDEERDIPERSWNSGNEWITDFVGKTVWFVPSIKAGNVNCLRKNGKKVIQLSRKTFDTEYQKT---LNDWDFVVTTDISEMGANFIADRVIDPRRCLKPVILTDGPERVILAGPMPVTVASAAQRRGRV---GRNPQKENDQYIFMGQPLNKDEDHAHWTEAKM-----LDNINTPEGIIPALFEPEREKSAAIDGEYRLKGESRKTF---------VELMRRGDLPVWLAHKVASEGIKYTD---FDGERNNQI----LEENMDVEIWTKEGEKKK----LRPRWL-----DARTYSDPLALKEFKDFAAGR...... 618
15 -9.460IDP00273 gene: N/A; NS3 RNA Helicase AF180817_1476-2094 [Dengue virus 1]  ali follow..  11  173...........................................................................................................................................................................EGPLPEIEDEVFRKRNLTIMDLHPGSGKTRRYPAIVREAIKRKLRTLILAPTRVVASEMAEALKGRYQTTAVKSEHTGKEIVDLMCHATFTMRLLSPVRVPNYN-----IMDEAHFTDPASIAARGYISTRVGMGEAAAIFMTATPPGSVEAFPQSNAIIQDEERDIPERSWNSGYDWITDFPGKTVWFVPSIKSGNDNCLRKNGKRVIQLSRKTFDTEYQKTKN--NDWDYVVTTDISEMGANFRADRVIDPRRCLKPVILKDGPERVILAGPMPVTVASAAQRRGRI---GRNQNKEGDQ--------------------------------------YMGQPLNNDEDHAHWTEAKMLLDNIN--LRGEARKTFVELMRRGDLPVWLSYKVASEGFQYSD---FDGERNNQVLEENMDVEIWTKEG---ERKKLRPRWLDARTY----------SDPLALREFKEFAAGR...... 618

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.