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Query: TM0009 TM0009 281890 Purified-2001-02-14, from T.maritima

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst MIGPRDLLNIALRIESTGYSYYKNLTEKTEGETKALFERLAEQERDHSRKFKEILEKYEQDLNPSDEVLGYLEALAEISIFPKLEETPPDDLREAVRRAIEVEKDSIVFYSEILSYVPEKEPVQTIIDEEKKHLRDLLRLEVLast
1 -31.400IDP04040 gene: cotJC; spore coat protein CotJC [Clostridium perfringens ATCC 13124] CPF_1068 [Clostridium perfringens ATCC 13124]  ali follow..  12  31..........GPDGELSAALRYLNQRYTMPTKAKGLLTDIGTEEMAHVEMIATMIYQLMENASLEDLKKAGLAERYQGNPWTATYIQAKGDVVADLHEDMAAEQKARATYQWLINLTDDKEILRFLREREIVHFQRFGEALM 178
2 -16.000IDP02347 gene: ftnA; ferritin [Yersinia pestis CO92] YPO1783 [Yersinia pestis CO92]  ali follow..  11  5..EMAQKLNEQLNLEFYSANLYLQMSAWCSDKAAAFLKKHSQEEMQHMERLFEYLSGTGSMPVLGT---------------ITAPPVDFASLADVFKLTYEHEQLITTQINELAHVAMTTHFLQWYVAEQHEEEKLFKSILD 139
3 -15.900IDP00977 gene: ftnB; ferritin-like protein STM1932 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  5..GMVQKLNTPMNLEFYASNLYLHLSEWCSEHTATFLRTQAQGNVTQMMRMFNFMKNAGATPIVKA---------------IDVPGEELCSLEELFQKTLEDYQQRASTLSRLADEAKALNFLHTLEKEQQQDGVLLQTILE 139
4 -15.900IDP01129 ferritin BA_5296 [Bacillus anthracis str. Ames]  ali follow..  14  5..KLHDALNDQMNFEFYSAHAYMAMAAYCTAEFANFFLVQAEEERFHAMKLYNYINDRGERAIITG---------------FDNPNNEYESVLNAFEVALEHEREVTKRIYNLSDIAWDERFLKWFVDEQVEEEASFDSIIQ 139
5 -15.800IDP01358 ferritin VC0078 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  11..AMVEHLNEQINLEFFSSNLYLQMSAWCEDKAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGA---------------IAAPRHDFASLGEVFRETYQHEQKITQQINKLAHVAFTSQFLQWYVAEQHEEEKLFKGILD 145
6 -15.200IDP00611 ferritins family protein SACOL1952 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  5..NLLEALNDQMNHEYFAAHAYMAMAAYCDKEFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRA---------------VSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKFLNWFLDEQVEEESMFETHIN 139
7 -9.110IDP02619 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Bacillus anthracis str. `Ames Ancestor`] GBAA1372 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  51...YKRVLGGLTLLDTKQGGEGMPLVLVENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEETHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFLE--SYLFYSGFFKLTASGEIINLIIRDESIHGV....... 200
8 -8.860IDP90989 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis KIM 10] y1222 [Yersinia pestis KIM10+]  ali follow..  13  60...TIRVFTGLTLLDTQNTLGAPALIKDAIPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSEDNPLQKKADIISQHYHNDDPLKKKIASVFLE--SFLFYSGFYKLTNTADLIRLIIRDEAVHGYYIGYKFQ 208
9 -8.850IDP06237 gene: nrdF; ribonucleotide-diphosphate reductase subunit beta [Streptococcus pneumoniae TIGR4] NP_345649 [Streptococcus pneumoniae TIGR4]  ali follow..  12  55...VGKVFGGLTLLDTQSETGVQALRADIRPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTPYLQKKAEIVNEIYLNGSPLEKKVASVFLE--TFLFYSGFFKLANVAEIIKLIIRDESVHGTYIGYKFQ 203
10 -8.670IDP95259 ribonucleotide-diphosphate reductase subunit beta [Acinetobacter baumannii ATCC 17978] YP_001083788 [Acinetobacter baumannii ATCC 17978]  ali follow..  21  115........................YRHITNPECRQYILRQAFEEAIHTHAYQYCIESLGMDEGEAAWGLKYTQSLSDPTFHTGTPENDQRLLRNLIAFYCVLE--GIFFYCGFTQILS-AEQFQYILRDESMHLN....... 246
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.