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Query: TM0005 TM0005 281886 Purified-2001-01-30, from T.maritima

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEILSGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIFLast
1 -19.700HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  15  5.SPIQALLQQRTLLQIEYYTEKEAFRKQTEQMGMQRKVKRGDAWFPLRIGKSFYNSNQNAIEVFRTQDIEHNFEFGRPVMFFKAGEKYFSFTGTVSYVDGDRMVITVPDSAPQADVPVGVQLSFDETSYKMMFDALDRTMKAKAYLRDLFYSHRKAERYSFEPMR..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 195
2 -2.690PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  16  14..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EKVMENGMQKKVTEPYLVARIIEEMTPFISGEFTVSDIKRFPSDEESADRWFKCKLIFITLDEKSGAEKKTSTQVLVQAADLRDAGTMADYQIGMVSETP.................................... 137
3 -2.550PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  11  9...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LNLINPEDIESQTILKDAAATALYGSRGANGVVLI----TTKSGRRGKTHIAFTAEYG..... 62
4 -2.200PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  119........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDEYK....................................................................... 182
5 -2.180PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  233......................................................................................................................................................................................................................................................................................................................................................................................................................................................ESYFLLAEAAEYGWISNITPKEAYELGIRSS-------------------------------FEYFGVSEYADNSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLTKIITQKIAQMPYQVLEIRRLGLPFFEIPANESDLIMRYPTTLDNAD---ENYQKAVELLGGSDVIIT-PLW................ 436
6 -2.040PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  10  1..................................................................................................................................................................................MHRSISGSDC----GPTPTSSTLPLTPYTPAMPFLTRSVLALVLLSCDGVGDFGDTNEDPTTANDPNPDLEFTTLQLGVSGSRFDMWRTNLIYTMP----------IVQHIANPGFYAGNFNQYVGAWSASFFDTRYGGGPNGSNFLRTVTNAETLISELEGKPRQVNRLAATRIMRVLTFQRLT------------VYGDVPYFDAGKGALEGEFTP-----------TRQD---------------SIYMDLHDELRAAVDQFDAS----------GADLFFNGSIEQWKRFANSL.............................................................................................................................................................................. 256
7 -1.980HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  10  1.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MTPYKVQLKKLNN--SSSLTKKNMTMEENTVHPAVAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTICFIPMALK..................... 93
8 -1.970PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  10  62..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................RKTRKVWPYRKYTKIVQKYIEEQFELKKLTRTEGQ----ILVKLIRQTGVTTFQLIKNLR-WRAFWYDTTAGLF---NPVNNREDFLIEDILQRSFQRNIL... 191
9 -1.840PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  14  11....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VMVIDVAYLNFVINDLRKYFEPLLGRSTVDLALFTMYLAMDAGLKGNDVQVLLVYDKQSGKLEHCLPSDLK-NELDGFKASLGEFSFMAAPSEGFVSRGDLYLDLLQI-VLNAAEVKKLIVVPFNEEYGKE................... 145
10 -1.810PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  13  85............................................................................................................................................................................................................................................................................ALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSD----VADNA......................................................................................................................................................................................................................................................................... 199

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.