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Query: TM0013 TM0013 281894 Purified-2001-08-24, from T.maritima

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSLLast
1 -4.860PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  126..............................GAKLLIAADGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDS.............................................................................................................................................................. 205
2 -3.220PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  41.............................ATINDVEMKSGAPVLKAGRLMTQSDLNELVTGLSQSQSLSVPSWIDTTMLALGAGRMIWYTPACQRAMSSFTKDTFEAQGQLPTPGLVWLVMQGALYVYAYKGSGRPDKETKLYQAPDNAAIPHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMTE-EGRLVDLPLTVADLLAPDLNQKLGNIDRAAG............................... 263
3 -2.840PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  11............................RFGCYLLLFACPIIFASIMKKEFIGRTAKSALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLVTMEERNDLCRRAGHLSGFTHTASLESGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLS........................... 224
4 -2.500HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  13  4...............................................EVHYFDELLERIRDIRASEKVKEIFALSVDYDSKSQVAQSFFKSVQNKLATGHTAPELIAKRADASKDNMGLTSFKGVKVRRGD----------------------TVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHM--------ADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYEQYDT........... 177
5 -2.430PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  32........................................................CILKEIGKGGYSPVLPMRVTNEN-----GEVIESRSRFAFIRMDSGEVDVVFYPTLKSSPLECYNEEQQKQLLDGKSIIADVAMADGRRSKAFVQIDEETKQVMYVPT......................................................................................... 134
6 -2.410PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  20  24.............................LLRYL-TAGSDEIIIEARIAELFYEKMENERQVITQKEVDAVIAIMGQPE.............................................................................................................................................................................. 83
7 -2.410PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  7...................................RHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGG-EEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEA----------WAVFDKDENIAFSSRSFENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCRL............. 259
8 -2.110PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  11............................HFKRYIHVKGKKTGLFITPAGEHGESMLKVGRELLNEGGNEIL...................................................................................................................................................................................... 59
9 -2.050PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  30..................................IRADEPRKVWDFVDLASRDAVDKTLQRLTKAEALRRILYDQPGFNKLTQVIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVVHTDARRRAIKLGNATITFRPTA----ASKLFWAGRPAMRVV--QALHWLRDLLVRDGESEQIQRKLAKLFEDPAVGPPLKADLAAGMTALPTWMLVFL.................................... 221
10 -2.040PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  104....................................................NQLKDILETIIGVEDVSIVVNSTNETDKQGGKRTVSEMSSDEEIVIIKNGDK-VVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRVAVAPKKMK................................................................................................ 228

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.