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Query: TM0003 TM0003 281884 Purified-2001-12-06, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40
1 -5.280sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens GN=ARID1A PE=1 SV=3  ali   16  23...............EFDSGLLHWRIGGGDTTEHIQTHFE 47
2 -4.720sp|Q2M243|CCD27_HUMAN Coiled-coil domain-containing protein 27 OS=Homo sapiens GN=CCDC27 PE=2 SV=2  ali   40  1................FMSKMELRRVFPQFSTRATSMS.. 28
3 -4.460sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens GN=ARID1B PE=1 SV=2  ali   25  30...............EFNSGLLHWQLGGGDTTEHIQTHF. 53
4 -4.180tr|B1P2N7|B1P2N7_HUMAN Numb isoform 7 OS=Homo sapiens GN=NUMB PE=2 SV=1  ali   22  37.....PYPAPNVPVVGITPSQMVANVFGTAGH........ 63
5 -4.180sp|P49757|NUMB_HUMAN Protein numb homolog OS=Homo sapiens GN=NUMB PE=1 SV=2  ali   22  37.....PYPAPNVPVVGITPSQMVANVFGTAGH........ 63
6 -3.920sp|Q2VWA4|SKOR2_HUMAN SKI family transcriptional corepressor 2 OS=Homo sapiens GN=SKOR2 PE=1 SV=2  ali   18  1.KGPRSYPVIPVPSKGSFGGV---GLFPHPYTFPAAAA.. 42
7 -3.730sp|Q14157|UBP2L_HUMAN Ubiquitin-associated protein 2-like OS=Homo sapiens GN=UBAP2L PE=1 SV=2  ali   28  15........TEEWGTEDWNEDLSETKIFTASNVSSVP.... 42
8 -3.690sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3  ali   18  33........FTKMAIYGYRHPLELWSLKEEDRSQMVVQQLL 67
9 -3.660sp|Q9NYP8|CU062_HUMAN Uncharacterized protein C21orf62 OS=Homo sapiens GN=C21orf62 PE=1 SV=2  ali   26  20.SAFKSYSIENVTSIANN-DFSYFRTFPMPSNKSYVVTF. 58
10 -3.480tr|C9J713|C9J713_HUMAN Uncharacterized protein OS=Homo sapiens GN=RSRC1 PE=4 SV=1  ali   33  12VKEIEAIESDSFVQQTFRSSKEVKKLF............. 38

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24