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Query: TM0005 TM0005 281886 Purified-2001-01-30, from T.maritima

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVQQFIKKLVRLVELERNAEINAMLDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSSEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEILSGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIFLast
1 -5.970sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3  ali   6  72........................................................................................................................................................................KESDRTFEILEKFALKDVELDFNNVAADSSLDSVPRFFRINPTPTYKS.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 119
2 -4.860sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47 PE=1 SV=3  ali   15  32........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQIENAAEEPRVLCIIQDTTNSKTVNERITLNLPASTPVRKLFEDVANKVGYIN-GTFD-NTADMAPLDHTSDKSLLDANFEPGKKN-FLHLT..................................... 128
3 -4.650sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo sapiens GN=SAMD9L PE=1 SV=2  ali   14  24......................................................................................................................................................................VKRDSYEKLKDLIHCWAESPKIINLYHHPGCGGT-TLAMHVLWDLKKNFRCAVLKNKTTDFAEIAEQV---INLVTYRAKSHQDYIPVLLLVDDFEEQENVYFLQNAIHSVLAE.................................................................................................................................................................................................................................................................................................................................................................................. 138
4 -4.430sp|Q8N0U4|F185A_HUMAN Protein FAM185A OS=Homo sapiens GN=FAM185A PE=2 SV=3  ali   12  4.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................VSPFGR----LRARLPCHLAVRPLDPLTYPDGDRVLVAVCGVEGGV-----RGLDGLQVKYDEDLEEMAIVSDT......................... 68
5 -4.170sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1  ali   18  7.............................................................................................................................................................................................................................................................................................................................................................................................LNEAPWSTAGDPPIPYLTTYGQLSNGDHHFMHDAVFGQPG-GLGNNIYQH........................................................................................................................................................................................................................... 55
6 -4.130sp|Q8NCR6|CI024_HUMAN Uncharacterized protein C9orf24 OS=Homo sapiens GN=C9orf24 PE=2 SV=2  ali   16  1..................................................................................................................................................................................................................................................................................................................................................................................................GSISGHPYLP----KYWLSQEEADKCSPNYLGSRMEPYNSSCCNKYTTYLP----RLPKEARMETAVRGMPLEC---------------------------------------------------------PPRPERLNAYEREVMVNMLNSLSRN----QQLPRITPRCGCVDPLPGRL----------PFHGYESAC----CLRGMDYYASGAPCTDRRLRPWCREQPTMCTSL............................ 165
7 -4.020sp|Q8N1Q8|THEM5_HUMAN Thioesterase superfamily member 5 OS=Homo sapiens GN=THEM5 PE=2 SV=2  ali   11  47................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PEKTDLKDYALPNASWCSDMLSLYQEFLEKTKSSG----LPSFKSNRDHI-----RGLKLPSGLAVSSDKGDCRIF--TRCIQVEGQGF................................................. 127
8 -3.960tr|E7ERX2|E7ERX2_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZSWIM4 PE=4 SV=1  ali   23  41..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................QGRLGEPFPTACARVDTLRAHGYPRQALRLASAIINTLR................................. 82
9 -3.920sp|Q96RE7|NACC1_HUMAN Nucleus accumbens-associated protein 1 OS=Homo sapiens GN=NACC1 PE=1 SV=1  ali   12  12........................................................................................................................................................................................................................................................................................................................................................................................YSMMNVGQTAEKVEALPEQVAPESRNRIRVRDLASLPAELINQIGNRCHPKLYEKLELVTGTNVYITRAQL-MNCHVSA................................................................................................................................................................................................... 96
10 -3.910sp|Q711Q0|CJ071_HUMAN Uncharacterized protein C10orf71 OS=Homo sapiens GN=C10orf71 PE=2 SV=2  ali   30  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MQGNKKCTDAFS-----DSSSIGVLDDADREVSSLTRAFRSLCI-SEDTSFHDSYL................. 53
FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 1 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.